RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 CALCAP01258 141 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 IGLV3-27P01718 113 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 HNRNPLP14866 589 aaKnown RBP eCLIP12.06□□□□□ -0.482e-12■■■□□ 15.2
RTN3-209ENST00000538995 NTSR1P30989 418 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 PDCLQ13371 301 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 EIF4HQ15056 248 aaKnown RBP12.06□□□□□ -0.48
RTN3-209ENST00000538995 PLK5Q496M5 336 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 MPPE1Q53F39 396 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 MIIPQ5JXC2 388 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 EMC10Q5UCC4 262 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 DENND1BQ6P3S1 775 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 GJB7Q6PEY0 223 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 ERMP1Q7Z2K6 904 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 TMEM110Q86TL2 294 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 KBTBD6Q86V97 674 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 UNC45BQ8IWX7 931 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 OLIG1Q8TAK6 271 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 ENOX1Q8TC92 643 aaKnown RBP12.06□□□□□ -0.48
RTN3-209ENST00000538995 SPACA7Q96KW9 195 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 SERPINB11Q96P15 392 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 GABRG3Q99928 467 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 SIX2Q9NPC8 291 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 ST7Q9NRC1 585 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 SEMA4GQ9NTN9 838 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 DLL3Q9NYJ7 618 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 SFMBT1Q9UHJ3 866 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 PCDHGC3Q9UN70 934 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 TCRBV21S2A2A0A5A6 115 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 KCNJ18B7U540 433 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 PRRT4C9JH25 899 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 IRAK2O43187 625 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 MSI1O43347 362 aaKnown RBP12.05□□□□□ -0.48
RTN3-209ENST00000538995 MBD3O95983 291 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 NCAM1P13591 858 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 HOXB2P14652 356 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 SLC11A2P49281 568 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 FOXK2Q01167 660 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 PTK2Q05397 1052 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 SPEM2Q0P670 501 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 BYSLQ13895 437 aaKnown RBP12.05□□□□□ -0.48
RTN3-209ENST00000538995 KCNJ12Q14500 433 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 PUM1Q14671 1186 aaKnown RBP eCLIP12.05□□□□□ -0.48
RTN3-209ENST00000538995 ARHGAP44Q17R89 818 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 TCP11X2Q5H9J9 407 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 ADGRF1Q5T601 910 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 EGFLAMQ63HQ2 1017 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 SDE2Q6IQ49 451 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 TOGARAM2Q6ZUX3 1019 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 ANKS1BQ7Z6G8 1248 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 CHPFQ8IZ52 775 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 GPT2Q8TD30 523 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 DQX1Q8TE96 717 aaKnown RBP12.05□□□□□ -0.48
RTN3-209ENST00000538995 CLEC4CQ8WTT0 213 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 BHMTQ93088 406 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 AZIN2Q96A70 460 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 FAM149B1Q96BN6 582 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 RMDN1Q96DB5 314 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 P2RY11Q96G91 374 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 NOX5Q96PH1 765 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 TPSD1Q9BZJ3 242 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 MIS12Q9H081 205 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 DUSP15Q9H1R2 295 aaPredicted RBP12.05□□□□□ -0.48
RTN3-209ENST00000538995 LHX5Q9H2C1 402 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 PLK2Q9NYY3 685 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 BCCIPQ9P287 314 aaKnown RBP eCLIP12.05□□□□□ -0.48
RTN3-209ENST00000538995 DNAJC12Q9UKB3 198 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 HCN2Q9UL51 889 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 NFE2L3Q9Y4A8 694 aa12.05□□□□□ -0.48
RTN3-209ENST00000538995 A0A1W2PQF6 199 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 E5RJQ4 531 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 PIK3R2O00459 728 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 ZBTB24O43167 697 aaPredicted RBP12.04□□□□□ -0.48
RTN3-209ENST00000538995 PAPSS1O43252 624 aaPredicted RBP12.04□□□□□ -0.48
RTN3-209ENST00000538995 GLI1P08151 1106 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 HOXD9P28356 352 aaPredicted RBP12.04□□□□□ -0.48
RTN3-209ENST00000538995 USP8P40818 1118 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 P2RY2P41231 377 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 TBX4P57082 545 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 SNX16P57768 344 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 BPIFB4P59827 614 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 APBA1Q02410 837 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 MPP7Q5T2T1 576 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 PMS2CLQ68D20 193 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 RNF43Q68DV7 783 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 PRR23CQ6ZRP0 262 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 SCUBE3Q8IX30 993 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 FAM71AQ8IYT1 594 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 ZNF557Q8N988 423 aaPredicted RBP12.04□□□□□ -0.48
RTN3-209ENST00000538995 NETO1Q8TDF5 533 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 WFIKKN2Q8TEU8 576 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 DDI1Q8WTU0 396 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 UCMAQ8WVF2 138 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 HMGB4Q8WW32 186 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 PIWIL1Q96J94 861 aaKnown RBP12.04□□□□□ -0.48
RTN3-209ENST00000538995 DDX50Q9BQ39 737 aaKnown RBP12.04□□□□□ -0.48
RTN3-209ENST00000538995 POPDC2Q9HBU9 364 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 CD248Q9HCU0 757 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 ACP6Q9NPH0 428 aa12.04□□□□□ -0.48
RTN3-209ENST00000538995 SAMSN1Q9NSI8 373 aaKnown RBP12.04□□□□□ -0.48
RTN3-209ENST00000538995 ASNSD1Q9NWL6 643 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms