RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 DEPTORQ8TB45 409 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 TCP10LQ8TDR4 215 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 ADAMTS16Q8TE57 1224 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 WNT8BQ93098 351 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 NKD2Q969F2 451 aaPredicted RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 EME1Q96AY2 570 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 KLHDC7BQ96G42 594 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 MEGF10Q96KG7 1140 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 C9orf72Q96LT7 481 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 CITED4Q96RK1 184 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 CYTH2Q99418 400 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 THTPAQ9BU02 230 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 YIPF2Q9BWQ6 316 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 MAK16Q9BXY0 300 aaKnown RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 PARVBQ9HBI1 364 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 TMEM165Q9HC07 324 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 MRPL47Q9HD33 250 aaKnown RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 MRPL40Q9NQ50 206 aaKnown RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 LATS2Q9NRM7 1088 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 MRGBPQ9NV56 204 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 RRN3Q9NYV6 651 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 DCTN4Q9UJW0 460 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 NOCTQ9UK39 431 aaKnown RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 AJAP1Q9UKB5 411 aaPredicted RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 PPM1HQ9ULR3 514 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 STX8Q9UNK0 236 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 FAM32AQ9Y421 112 aaKnown RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 CEPT1Q9Y6K0 416 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 MYPNQ86TC9 1320 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 DOT1LQ8TEK3 1739 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 CYP2D7A0A087X1C5 515 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 TCRBV7S2A1N4TA0A589 114 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 IQCA1LA6NCM1 817 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 E9PMD0 336 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 POC1B-GALNT4F8VUJ3 575 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 TRDMT1O14717 391 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 AREL1O15033 823 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 LSM1O15116 133 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 TGFB1I1O43294 461 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 EDIL3O43854 480 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 ADCY3O60266 1144 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 NMT2O60551 498 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 LPXNO60711 386 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 DNAJA2O60884 412 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 ZC3H11AO75152 810 aaKnown RBP eCLIP6.93□□□□□ -1.3
USP28-207ENST00000538475 PROSCO94903 275 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 TDP2O95551 362 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 FOSP01100 380 aaPredicted RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 SNHG28P0DPA3 235 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 DLATP10515 647 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 ETS2P15036 469 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 ALOX15P16050 662 aaPredicted RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 POLR2EP19388 210 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 PROZP22891 400 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 ADRA1DP25100 572 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 MAPK4P31152 587 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 SLC5A2P31639 672 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 PIK3CAP42336 1068 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 HALP42357 657 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 ALDH1A3P47895 512 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 GALK1P51570 392 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 BCAP31P51572 246 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 HK2P52789 917 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 VCPP55072 806 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 ESRRGP62508 458 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 DYNLL1P63167 89 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 DLG4P78352 724 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 COG7P83436 770 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 TXNL4AP83876 142 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 CHRNDQ07001 517 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 DLG1Q12959 904 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 DPYSQ14117 519 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 SEPT6Q14141 434 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 IKBKEQ14164 716 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 CNGA3Q16281 694 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 PTPROQ16827 1216 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 MYLK3Q32MK0 819 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 EPC2Q52LR7 807 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 DEPDC1Q5TB30 811 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 METTL21CQ5VZV1 264 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 THOC7Q6I9Y2 204 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 TOM1L2Q6ZVM7 507 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 RAPH1Q70E73 1250 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 USP37Q86T82 979 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 SETD3Q86TU7 594 aaPredicted RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 TICAM1Q8IUC6 712 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 WDR75Q8IWA0 830 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 PQLC1Q8N2U9 271 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 Q8N3U1 123 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 PDPRQ8NCN5 879 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 DDHD1Q8NEL9 900 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 CEP70Q8NHQ1 597 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 SH3RF3Q8TEJ3 882 aaPredicted RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 CHPT1Q8WUD6 406 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 C1orf54Q8WWF1 131 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 SHC3Q92529 594 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 CASP10Q92851 521 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 REEP2Q9BRK0 252 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 SSBP4Q9BWG4 385 aaPredicted RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms