RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 HIC1Q14526 733 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 PAFAH1B3Q15102 231 aaKnown RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 PRKD1Q15139 912 aaPredicted RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 CCL14Q16627 93 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 CA9Q16790 459 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 MSS51Q4VC12 460 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 MDH1BQ5I0G3 518 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 GNASQ5JWF2 1037 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 CST9Q5W186 159 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 NCBP2-AS2Q69YL0 99 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 ZNF449Q6P9G9 518 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 CAPN12Q6ZSI9 719 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 FAM43BQ6ZT52 329 aaPredicted RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 CLEC20AQ6ZU45 233 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 BEND5Q7L4P6 421 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 MRPL10Q7Z7H8 261 aaKnown RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 FAM35AQ86V20 835 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 OSTM1Q86WC4 334 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 LRRC6Q86X45 466 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 CHSY1Q86X52 802 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 TMEM130Q8N3G9 435 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 RAB3IL1Q8TBN0 382 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 RNF139Q8WU17 664 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 DCAKDQ8WVC6 231 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 HTR3CQ8WXA8 447 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 CDKL2Q92772 493 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 NT5C3BQ969T7 300 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 LENG1Q96BZ8 264 aaPredicted RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 SENP8Q96LD8 212 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 PPP1R2P1Q96PQ5 205 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 EPAS1Q99814 870 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 PAIP2Q9BPZ3 127 aaKnown RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 B3GNT5Q9BYG0 378 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 VPS11Q9H270 941 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 GOLGA2P5Q9HBQ8 144 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 RXFP1Q9HBX9 757 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 ARHGEF4Q9NR80 690 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 KRT82Q9NSB4 513 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 TXLNGQ9NUQ3 528 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 GEMIN8Q9NWZ8 242 aaKnown RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 DTLQ9NZJ0 730 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 SLC12A4Q9UP95 1085 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 TTLL3Q9Y4R7 772 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 USP3Q9Y6I4 520 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 USH1CQ9Y6N9 552 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 FNDC1Q4ZHG4 1894 aaPredicted RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 TCRBV7S3A2A0A539 114 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 M0QYT0 321 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CA12O43570 354 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 LPXNO60711 386 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 EDF1O60869 148 aaKnown RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 SPAG7O75391 227 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 GABBR2O75899 941 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CABYRO75952 493 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 ITGBL1O95965 494 aaPredicted RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 IL1BP01584 269 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 APOEP02649 317 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CYP11A1P05108 521 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CREB1P16220 341 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 GOT1P17174 413 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 MX2P20592 715 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 DNAJB2P25686 324 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CST5P28325 142 aaPredicted RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 RPA3P35244 121 aaPredicted RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 PSMC4P43686 418 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 TKTL1P51854 596 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 WDR4P57081 412 aaKnown RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 DAOAP59103 153 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 COG7P83436 770 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 GBE1Q04446 702 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 SLC18A2Q05940 514 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 ZNF33AQ06730 810 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 MGAT3Q09327 533 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CRHR2Q13324 411 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 MPP2Q14168 576 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 ZKSCAN8Q15776 578 aaPredicted RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 NBPF20Q3BBV1 942 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 DCAF6Q58WW2 860 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 RAB41Q5JT25 222 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 HP1BP3Q5SSJ5 553 aaPredicted RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 WSCD1Q658N2 575 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 GDF6Q6KF10 455 aaPredicted RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 LVRNQ6Q4G3 990 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 KCNT2Q6UVM3 1135 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CCDC91Q7Z6B0 441 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 SAPCD2Q86UD0 394 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 FAM131BQ86XD5 332 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 C4orf33Q8N1A6 199 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CCDC185Q8N715 623 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 BANPQ8N9N5 519 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 PCSK9Q8NBP7 692 aaKnown RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 GSDMBQ8TAX9 411 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CLEC4CQ8WTT0 213 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 MZB1Q8WU39 189 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CFAP36Q96G28 342 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 HHIPL1Q96JK4 782 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 VAT1Q99536 393 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 EBNA1BP2Q99848 306 aaKnown RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 ACBD6Q9BR61 282 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CXCL16Q9H2A7 254 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms