RNA–Protein interactions for RNA: ENST00000532331.5

PTPRK-221, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,757 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-221ENST00000532331 SELENONQ9NZV5 590 aa11.63□□□□□ -0.55
PTPRK-221ENST00000532331 XRN1Q8IZH2 1706 aaKnown RBP11.63□□□□□ -0.55
PTPRK-221ENST00000532331 PFDN1O60925 122 aa11.63□□□□□ -0.55
PTPRK-221ENST00000532331 PLEKP08567 350 aaPredicted RBP11.63□□□□□ -0.55
PTPRK-221ENST00000532331 KRT16P08779 473 aa11.63□□□□□ -0.55
PTPRK-221ENST00000532331 CTSEP14091 401 aa11.63□□□□□ -0.55
PTPRK-221ENST00000532331 POLR2LP62875 67 aaKnown RBP11.63□□□□□ -0.55
PTPRK-221ENST00000532331 SH2D3CQ8N5H7 860 aa11.63□□□□□ -0.55
PTPRK-221ENST00000532331 MYLPFQ96A32 169 aa11.63□□□□□ -0.55
PTPRK-221ENST00000532331 MIR1-1HGQ9H1L0 117 aa11.63□□□□□ -0.55
PTPRK-221ENST00000532331 RNF186Q9NXI6 227 aa11.63□□□□□ -0.55
PTPRK-221ENST00000532331 NUDT5Q9UKK9 219 aa11.63□□□□□ -0.55
PTPRK-221ENST00000532331 PDZK1P1A8MUH7 402 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 C5orf58C9J3I9 102 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 RRM1P23921 792 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 C1QBPQ07021 282 aaKnown RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 SMARCB1Q12824 385 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 C6orf10Q5SRN2 563 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 PATL1Q86TB9 770 aaKnown RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 LZTR1Q8N653 840 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 ADAM32Q8TC27 787 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 CCDC90BQ9GZT6 254 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 SOWAHBA6NEL2 793 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 MAP3K6O95382 1288 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 RARGP13631 454 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 MSH3P20585 1137 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 GABRR2P28476 465 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 CARSP49589 748 aaKnown RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 ITGB3BPQ13352 177 aaPredicted RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 TFDP3Q5H9I0 405 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 C11orf96Q7Z7L8 435 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 RNF168Q8IYW5 571 aaPredicted RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 TRMT13Q9NUP7 481 aaKnown RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 TBC1D13Q9NVG8 400 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 RBM22Q9NW64 420 aaKnown RBP eCLIP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 CDYLQ9Y232 598 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 ARVCFO00192 962 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 B4GALT5O43286 388 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 GRK3P35626 688 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 RAP1GDS1P52306 607 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 SLC6A3Q01959 620 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 BCL2L1Q07817 233 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 EFL1Q7Z2Z2 1120 aaKnown RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 CCDC33Q8N5R6 958 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 CATSPER1Q8NEC5 780 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 HAS1Q92839 578 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 CELF6Q96J87 481 aaKnown RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 FICDQ9BVA6 458 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 C2orf49Q9BVC5 232 aaPredicted RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 USP15Q9Y4E8 981 aaPredicted RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 C1QTNF3-AMACRE9PGA6 284 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 ADH1CP00326 375 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 EPB42P16452 691 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 NPR3P17342 541 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 GTF2BQ00403 316 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 DNAL1Q4LDG9 190 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 TAGAPQ8N103 731 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 KIAA0895Q8NCT3 520 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 TMEM161BQ8NDZ6 487 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 OR2W6PQ8NHA6 318 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 SLC20A1Q8WUM9 679 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 NXF3Q9H4D5 531 aaKnown RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 WWOXQ9NZC7 414 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 AURKCQ9UQB9 309 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 LMO7Q8WWI1 1683 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 VPS26AO75436 327 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 OCA2Q04671 838 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 UGCGQ16739 394 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 CPA6Q8N4T0 437 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 CCDC3Q9BQI4 270 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 SPATS2LQ9NUQ6 558 aaKnown RBP11.62□□□□□ -0.55
PTPRK-221ENST00000532331 PSD3Q9NYI0 1048 aa11.62□□□□□ -0.55
PTPRK-221ENST00000532331 ZSCAN9O15535 394 aaPredicted RBP11.61□□□□□ -0.55
PTPRK-221ENST00000532331 KLHL2O95198 593 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 PCYOX1LQ8NBM8 494 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 B3GALNT2Q8NCR0 500 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 KCNV2Q8TDN2 545 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 COPS7BQ9H9Q2 264 aaPredicted RBP11.61□□□□□ -0.55
PTPRK-221ENST00000532331 BLOC1S4Q9NUP1 217 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 UTP6Q9NYH9 597 aaKnown RBP11.61□□□□□ -0.55
PTPRK-221ENST00000532331 UBA2Q9UBT2 640 aaPredicted RBP11.61□□□□□ -0.55
PTPRK-221ENST00000532331 MARCOQ9UEW3 520 aaPredicted RBP11.61□□□□□ -0.55
PTPRK-221ENST00000532331 PTCH2Q9Y6C5 1203 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 CHD2O14647 1828 aaKnown RBP11.61□□□□□ -0.55
PTPRK-221ENST00000532331 SOCS7O14512 581 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 DYRK3O43781 588 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 ARF4P18085 180 aaPredicted RBP11.61□□□□□ -0.55
PTPRK-221ENST00000532331 CYP2F1P24903 491 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 PLA2G4AP47712 749 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 HDAC4P56524 1084 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 TCF25Q9BQ70 676 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 VANGL2Q9ULK5 521 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 TGM2P21980 687 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 ICAM3P32942 547 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 CYP2C18P33260 490 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 BRCC3P46736 316 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 PRKAA1Q13131 559 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 CCNJLQ8IV13 435 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 RFWD2Q8NHY2 731 aa11.61□□□□□ -0.55
PTPRK-221ENST00000532331 LENG9Q96B70 501 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms