RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ABCA7Q8IZY2 2146 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 CNOT1A5YKK6 2376 aaKnown RBP15.42■□□□□ 0.06
VPS28-215ENST00000531924 THADAQ6YHU6 1953 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 IGHV1OR15-9A0A0B4J2B8 117 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 GIPC1O14908 333 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 PENKP01210 267 aaPredicted RBP15.42■□□□□ 0.06
VPS28-215ENST00000531924 VDRP11473 427 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 MFAP3P55082 362 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 SHC2P98077 582 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 PDE4CQ08493 712 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 ADIGQ0VDE8 80 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 FOXC1Q12948 553 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 COBLL1Q53SF7 1204 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 RAB41Q5JT25 222 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 FYB2Q5VWT5 728 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 TRIML1Q8N9V2 468 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 UBA3Q8TBC4 463 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 MRGPRX1Q96LB2 322 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 HSPA12BQ96MM6 686 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 PRDM16Q9HAZ2 1276 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 FBXO10Q9UK96 956 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 COQ4Q9Y3A0 265 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 GTF3C3Q9Y5Q9 886 aa15.42■□□□□ 0.06
VPS28-215ENST00000531924 TRIM49BA6NDI0 452 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 WASH3PC4AMC7 463 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 TIMM44O43615 452 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 SYPP08247 313 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 SERPINF2P08697 491 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 SETSIPP0DME0 302 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 GNSP15586 552 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 PPP1R2P41236 205 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 ZNF132P52740 706 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 GEN1Q17RS7 908 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 MPPE1Q53F39 396 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 WDR45BQ5MNZ6 344 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 PM20D1Q6GTS8 502 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 ISM2Q6H9L7 571 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 FMNL3Q8IVF7 1028 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 CPXM2Q8N436 756 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 DEFB124Q8NES8 71 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 NDRG1Q92597 394 aaKnown RBP15.41■□□□□ 0.06
VPS28-215ENST00000531924 GOLGA1Q92805 767 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 ERCC4Q92889 916 aaPredicted RBP15.41■□□□□ 0.06
VPS28-215ENST00000531924 FOXJ1Q92949 421 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 DHTKD1Q96HY7 919 aaPredicted RBP15.41■□□□□ 0.06
VPS28-215ENST00000531924 TIGD1Q96MW7 591 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 NT5C1BQ96P26 610 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 SLC2A11Q9BYW1 496 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 SLC6A17Q9H1V8 727 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 PCDHB4Q9Y5E5 795 aa15.41■□□□□ 0.06
VPS28-215ENST00000531924 CHD8Q9HCK8 2581 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 TULP2O00295 520 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 KRT37O76014 449 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 ACADMP11310 421 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 LCP1P13796 627 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 CD6P30203 668 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 FMO5P49326 533 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 PMS1P54277 932 aaKnown RBP15.4■□□□□ 0.06
VPS28-215ENST00000531924 ZNF445P59923 1031 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 EIF4HQ15056 248 aaKnown RBP15.4■□□□□ 0.06
VPS28-215ENST00000531924 PLEKHG6Q3KR16 790 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 FUT11Q495W5 492 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 BSPRYQ5W0U4 402 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 KLHL10Q6JEL2 608 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 TMEM270Q6UE05 265 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 SERPINA13PQ6UXR4 307 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 ZC3H3Q8IXZ2 948 aaKnown RBP15.4■□□□□ 0.06
VPS28-215ENST00000531924 PPM1KQ8N3J5 372 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 EDEM1Q92611 657 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 SLC35C1Q96A29 364 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 CEP63Q96MT8 703 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 ABCC13Q9NSE7 274 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 ELOVL2Q9NXB9 296 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 THAP10Q9P2Z0 257 aaPredicted RBP15.4■□□□□ 0.06
VPS28-215ENST00000531924 SUSD2Q9UGT4 822 aa15.4■□□□□ 0.06
VPS28-215ENST00000531924 HBS1LQ9Y450 684 aaKnown RBP15.4■□□□□ 0.06
VPS28-215ENST00000531924 MEI4A8MW99 385 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 TSPAN3O60637 253 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 OPHN1O60890 802 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 PAEPP09466 180 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 OXTRP30559 389 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 RDXP35241 583 aaKnown RBP15.39■□□□□ 0.05
VPS28-215ENST00000531924 IL12RB1P42701 662 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 TRIP4Q15650 581 aaPredicted RBP15.39■□□□□ 0.05
VPS28-215ENST00000531924 PEAR1Q5VY43 1037 aaPredicted RBP15.39■□□□□ 0.05
VPS28-215ENST00000531924 ENGASEQ8NFI3 743 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 KCTD13Q8WZ19 329 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 PRCCQ92733 491 aaPredicted RBP15.39■□□□□ 0.05
VPS28-215ENST00000531924 TMA16Q96EY4 203 aaKnown RBP15.39■□□□□ 0.05
VPS28-215ENST00000531924 SIPA1Q96FS4 1042 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 FSCN3Q9NQT6 498 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 CNGB3Q9NQW8 809 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 SFMBT1Q9UHJ3 866 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 PLA2G4CQ9UP65 541 aa15.39■□□□□ 0.05
VPS28-215ENST00000531924 BICDL2A1A5D9 508 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 YJEFN3A6XGL0 299 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 E7ENQ6 273 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 O00370 1275 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 ARHGAP33O14559 1287 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 EPHX1P07099 455 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms