RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 KIAA0100Q14667 2235 aaKnown RBP21.45■■□□□ 1.02
VPS28-209ENST00000528142 NLRC5Q86WI3 1866 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 TCRBV7S3A2A0A539 114 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 HOXA2O43364 376 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 TCEA3O75764 348 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 DGKIO75912 1065 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 AMHP03971 560 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 ALDH2P05091 517 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 ABHD2P08910 425 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 CAPN2P17655 700 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 SLC11A1P49279 550 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 CXCR3P49682 368 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 ATP1A2P50993 1020 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 CCL23P55773 120 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 MAGOHP61326 146 aaKnown RBP21.45■■□□□ 1.02
VPS28-209ENST00000528142 SEMA3BQ13214 749 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 AUHQ13825 339 aaKnown RBP21.45■■□□□ 1.02
VPS28-209ENST00000528142 DPYSQ14117 519 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 SLC45A4Q5BKX6 768 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 MFSD5Q6N075 450 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 CENPUQ71F23 418 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 FUBP3Q96I24 572 aaKnown RBP eCLIP21.45■■□□□ 1.02
VPS28-209ENST00000528142 OLFM3Q96PB7 478 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 CAPS2Q9BXY5 557 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 GPR62Q9BZJ7 368 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.45■■□□□ 1.022e-7■■■■□ 26
VPS28-209ENST00000528142 PAK5Q9P286 719 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 HCSTQ9UBK5 93 aa21.45■■□□□ 1.02
VPS28-209ENST00000528142 TMEM63AO94886 807 aa21.44■■□□□ 1.02
VPS28-209ENST00000528142 FGFR3P22607 806 aa21.44■■□□□ 1.02
VPS28-209ENST00000528142 FASTKD3Q14CZ7 662 aaKnown RBP21.44■■□□□ 1.02
VPS28-209ENST00000528142 NFE2Q16621 373 aaPredicted RBP21.44■■□□□ 1.02
VPS28-209ENST00000528142 TAB3Q8N5C8 712 aaPredicted RBP21.44■■□□□ 1.02
VPS28-209ENST00000528142 LRRN4Q8WUT4 740 aa21.44■■□□□ 1.02
VPS28-209ENST00000528142 TOX2Q96NM4 488 aa21.44■■□□□ 1.02
VPS28-209ENST00000528142 QKIQ96PU8 341 aaKnown RBP eCLIP21.44■■□□□ 1.02
VPS28-209ENST00000528142 TRIM62Q9BVG3 475 aa21.44■■□□□ 1.02
VPS28-209ENST00000528142 FAM72CH0Y354 149 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 GOLGA8MH3BSY2 632 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 RGS16O15492 202 aaPredicted RBP21.43■■□□□ 1.02
VPS28-209ENST00000528142 PARNO95453 639 aaKnown RBP21.43■■□□□ 1.02
VPS28-209ENST00000528142 IGLV3-25P01717 112 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 HPDP32754 393 aaPredicted RBP21.43■■□□□ 1.02
VPS28-209ENST00000528142 SLCO1A2P46721 670 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 BASP1P80723 227 aaKnown RBP21.43■■□□□ 1.02
VPS28-209ENST00000528142 EIF4EBP2Q13542 120 aaPredicted RBP21.43■■□□□ 1.02
VPS28-209ENST00000528142 TRIM60Q495X7 471 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 FAM72AQ5TYM5 149 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 FAM171A1Q5VUB5 890 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 FAM72DQ6L9T8 149 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 KCNT2Q6UVM3 1135 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 RFX8Q6ZV50 586 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 TAC4Q86UU9 113 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 FAM72BQ86X60 149 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 ARFGAP2Q8N6H7 521 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 DQX1Q8TE96 717 aaKnown RBP21.43■■□□□ 1.02
VPS28-209ENST00000528142 TTC25Q96NG3 672 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 ABI2Q9NYB9 513 aaPredicted RBP21.43■■□□□ 1.02
VPS28-209ENST00000528142 SMIM23A6NLE4 172 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 E7ESA3 106 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 CREB3O43889 395 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 AGTP01019 485 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 HCAR3P49019 387 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 ARL4CP56559 192 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 TLE2Q04725 743 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 PDIA2Q13087 525 aaKnown RBP21.43■■□□□ 1.02
VPS28-209ENST00000528142 KCNJ11Q14654 390 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 HIF1AQ16665 826 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 LONRF1Q17RB8 773 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 SKIDA1Q1XH10 827 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 CTXN3Q4LDR2 81 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 FNBP1LQ5T0N5 605 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 ZNF771Q7L3S4 317 aaPredicted RBP21.43■■□□□ 1.02
VPS28-209ENST00000528142 SERPINB12Q96P63 405 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 TMEM175Q9BSA9 504 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 PPP1R12CQ9BZL4 782 aa21.43■■□□□ 1.02
VPS28-209ENST00000528142 XPO7Q9UIA9 1087 aaKnown RBP21.43■■□□□ 1.02
VPS28-209ENST00000528142 SF3B1O75533 1304 aaKnown RBP eCLIP21.43■■□□□ 1.023e-6■■■■■ 56
VPS28-209ENST00000528142 PTPRDP23468 1912 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 A6NNZ2 444 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 EEF2KO00418 725 aaKnown RBP21.42■■□□□ 1.02
VPS28-209ENST00000528142 DCLK1O15075 740 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 EIF3HO15372 352 aaKnown RBP eCLIP21.42■■□□□ 1.02
VPS28-209ENST00000528142 GALTP07902 379 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 ACTN2P35609 894 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 PGFP49763 221 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 IRAK1P51617 712 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 YWHAGP61981 247 aaKnown RBP eCLIP21.42■■□□□ 1.02
VPS28-209ENST00000528142 IFI35P80217 286 aaPredicted RBP21.42■■□□□ 1.02
VPS28-209ENST00000528142 PAFAH1B3Q15102 231 aaKnown RBP21.42■■□□□ 1.02
VPS28-209ENST00000528142 ARL13BQ3SXY8 428 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 TUBB8Q3ZCM7 444 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 MSS51Q4VC12 460 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 VSTM1Q6UX27 236 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 BZW1Q7L1Q6 419 aaKnown RBP21.42■■□□□ 1.02
VPS28-209ENST00000528142 SCD5Q86SK9 330 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 CEP57Q86XR8 500 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 TET1Q8NFU7 2136 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 C8orf48Q96LL4 319 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 MRPL9Q9BYD2 267 aaKnown RBP21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms