RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 LTFP02788 710 aa19.62■□□□□ 0.73
VPS28-207ENST00000526977 CA3P07451 260 aa19.62■□□□□ 0.73
VPS28-207ENST00000526977 BEND5Q7L4P6 421 aa19.62■□□□□ 0.73
VPS28-207ENST00000526977 GSTA5Q7RTV2 222 aa19.62■□□□□ 0.73
VPS28-207ENST00000526977 PRUNE1Q86TP1 453 aa19.62■□□□□ 0.73
VPS28-207ENST00000526977 DEFB106AQ8N104 65 aa19.62■□□□□ 0.73
VPS28-207ENST00000526977 CCDC89Q8N998 374 aa19.62■□□□□ 0.73
VPS28-207ENST00000526977 TGS1Q96RS0 853 aaKnown RBP19.62■□□□□ 0.73
VPS28-207ENST00000526977 STAP1Q9ULZ2 295 aa19.62■□□□□ 0.73
VPS28-207ENST00000526977 SCML2Q9UQR0 700 aa19.62■□□□□ 0.73
VPS28-207ENST00000526977 CAPN9O14815 690 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 CST8O60676 142 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 ENDOD1O94919 500 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 RARGP13631 454 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 ELF1P32519 619 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 LMAN1P49257 510 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 GPR15P49685 360 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 VPS41P49754 854 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 ITGA8P53708 1063 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 ATP11AP98196 1134 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 SLMAPQ14BN4 828 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 OASLQ15646 514 aaKnown RBP19.61■□□□□ 0.73
VPS28-207ENST00000526977 CDO1Q16878 200 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 SLC25A52Q3SY17 297 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 BBS12Q6ZW61 710 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 SH2D3CQ8N5H7 860 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 POF1BQ8WVV4 589 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 NKD2Q969F2 451 aaPredicted RBP19.61■□□□□ 0.73
VPS28-207ENST00000526977 HAUS1Q96CS2 278 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 ATP6V1G3Q96LB4 118 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 TCF25Q9BQ70 676 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 EMILIN2Q9BXX0 1053 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 RRN3Q9NYV6 651 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 ANAPC5Q9UJX4 755 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 CNPP09543 421 aaKnown RBP19.61■□□□□ 0.73
VPS28-207ENST00000526977 MYZAPP0CAP1 466 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 CA8P35219 290 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 VCPP55072 806 aaKnown RBP19.61■□□□□ 0.73
VPS28-207ENST00000526977 DCAF6Q58WW2 860 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 BHLHA9Q7RTU4 235 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 MON1AQ86VX9 555 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 ALLCQ8N6M5 410 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 SLC35B2Q8TB61 432 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 CENPIQ92674 756 aaPredicted RBP19.61■□□□□ 0.73
VPS28-207ENST00000526977 NT5C3BQ969T7 300 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 CYP4F11Q9HBI6 524 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 NGRNQ9NPE2 291 aaKnown RBP19.61■□□□□ 0.73
VPS28-207ENST00000526977 ENTPD7Q9NQZ7 604 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 TLR9Q9NR96 1032 aa19.61■□□□□ 0.73
VPS28-207ENST00000526977 SAE1Q9UBE0 346 aaPredicted RBP19.61■□□□□ 0.73
VPS28-207ENST00000526977 FAM92AA1XBS5 289 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 ADH1AP07327 375 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 NUDT17P0C025 328 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 ARSEP51690 589 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 ERVK-21P61565 698 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 DYNLT1P63172 113 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 CAV1Q03135 178 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 SDHAF4Q5VUM1 108 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 BSPRYQ5W0U4 402 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 HFE2Q6ZVN8 426 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 STRADAQ7RTN6 431 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 TCEAL8Q8IYN2 117 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 ARHGAP18Q8N392 663 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 MRPL43Q8N983 215 aaKnown RBP19.6■□□□□ 0.73
VPS28-207ENST00000526977 GLIS1Q8NBF1 620 aa19.6■□□□□ 0.73
VPS28-207ENST00000526977 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.59■□□□□ 0.73
VPS28-207ENST00000526977 GOLGA6L10A6NI86 522 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 PRPSAP2O60256 369 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 SOAT2O75908 522 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 SEC24AO95486 1093 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 FYNP06241 537 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 ITGAVP06756 1048 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 YWHAQP27348 245 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 ALDH1A3P47895 512 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 EIF3BP55884 814 aaKnown RBP19.59■□□□□ 0.73
VPS28-207ENST00000526977 ERVFC1P60507 584 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 IFRD2Q12894 506 aaPredicted RBP19.59■□□□□ 0.73
VPS28-207ENST00000526977 SLC29A2Q14542 456 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 UBAP2Q5T6F2 1119 aaKnown RBP19.59■□□□□ 0.73
VPS28-207ENST00000526977 ACTL9Q8TC94 416 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 FAM172AQ8WUF8 416 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 LRRC4CQ9HCJ2 640 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 ABCC13Q9NSE7 274 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 SHBGP04278 402 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 ZSCAN5DPP0CG00 497 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 NCAM1P13591 858 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 CHKAP35790 457 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 YWHAGP61981 247 aaKnown RBP eCLIP19.59■□□□□ 0.73
VPS28-207ENST00000526977 OTUD4Q01804 1114 aaKnown RBP19.59■□□□□ 0.73
VPS28-207ENST00000526977 BOLA3Q53S33 107 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 CCDC25Q86WR0 208 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 TTC13Q8NBP0 860 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 BBOF1Q8ND07 529 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 KLHL5Q96PQ7 755 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 NPY6RQ99463 290 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 CALN1Q9BXU9 219 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.59■□□□□ 0.73
VPS28-207ENST00000526977 MSRAQ9UJ68 235 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 NAALADL1Q9UQQ1 740 aa19.59■□□□□ 0.73
VPS28-207ENST00000526977 LAMA2P24043 3122 aaKnown RBP19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms