RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SLC10A2Q12908 348 aaPredicted RBP15.36■□□□□ 0.05
NUP54-217ENST00000514987 NAB1Q13506 487 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 PDK1Q15118 436 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 PARP6Q2NL67 630 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 TWF2Q6IBS0 349 aaKnown RBP15.36■□□□□ 0.05
NUP54-217ENST00000514987 BNIPLQ7Z465 357 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 SIX6OS1Q8N1H7 587 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 AGGF1Q8N302 714 aaeCLIP15.36■□□□□ 0.05
NUP54-217ENST00000514987 CCDC185Q8N715 623 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 SMG8Q8ND04 991 aaKnown RBP15.36■□□□□ 0.05
NUP54-217ENST00000514987 SPOCK2Q92563 424 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 SERAC1Q96JX3 654 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 SIGLEC10Q96LC7 697 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 TMEM237Q96Q45 408 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 SLC2A13Q96QE2 648 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 NPY6RQ99463 290 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 TRIM55Q9BYV6 548 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 RNF39Q9H2S5 420 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 SAR1AQ9NR31 198 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 RRN3Q9NYV6 651 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 GJD2Q9UKL4 321 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 PCDHA11Q9Y5I1 949 aa15.36■□□□□ 0.05
NUP54-217ENST00000514987 FAM159BA6NKW6 160 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 TRIM49D1C9J1S8 452 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 GOLGA8RI6L899 631 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 PPP1R12AO14974 1030 aaPredicted RBP15.35■□□□□ 0.05
NUP54-217ENST00000514987 PYGBP11216 843 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 NEFHP12036 1026 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 AMPD1P23109 780 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 CCNFP41002 786 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 RGS2P41220 211 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 ETV4P43268 484 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 LHX1P48742 406 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 GLUD2P49448 558 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 GTF2A1P52655 376 aaPredicted RBP15.35■□□□□ 0.05
NUP54-217ENST00000514987 ZNF135P52742 658 aaPredicted RBP15.35■□□□□ 0.05
NUP54-217ENST00000514987 SOX4Q06945 474 aaPredicted RBP15.35■□□□□ 0.05
NUP54-217ENST00000514987 ADIGQ0VDE8 80 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 HIC1Q14526 733 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 FAXCQ5TGI0 409 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 UNC5AQ6ZN44 842 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 CCDC91Q7Z6B0 441 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 OSTM1Q86WC4 334 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 RAB3IL1Q8TBN0 382 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 FAM149B1Q96BN6 582 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 PPP1R10Q96QC0 940 aaKnown RBP15.35■□□□□ 0.05
NUP54-217ENST00000514987 TACO1Q9BSH4 297 aaKnown RBP15.35■□□□□ 0.05
NUP54-217ENST00000514987 TSSK1BQ9BXA7 367 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 MYLK2Q9H1R3 596 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 LRMDAQ9H2I8 198 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 NOD2Q9HC29 1040 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 SLC17A7Q9P2U7 560 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 CPA4Q9UI42 421 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 CHKBQ9Y259 395 aa15.35■□□□□ 0.05
NUP54-217ENST00000514987 MTO1Q9Y2Z2 717 aaKnown RBP15.35■□□□□ 0.05
NUP54-217ENST00000514987 HCRTO43612 131 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 CELF2O95319 508 aaKnown RBP15.34■□□□□ 0.05
NUP54-217ENST00000514987 FAM200BP0CF97 657 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 EZRP15311 586 aaKnown RBP15.34■□□□□ 0.05
NUP54-217ENST00000514987 GOT1P17174 413 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 MTM1Q13496 603 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 PAFAH1B3Q15102 231 aaKnown RBP15.34■□□□□ 0.05
NUP54-217ENST00000514987 PRKD1Q15139 912 aaPredicted RBP15.34■□□□□ 0.05
NUP54-217ENST00000514987 DBN1Q16643 649 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 FSCN1Q16658 493 aaKnown RBP15.34■□□□□ 0.05
NUP54-217ENST00000514987 DCAF6Q58WW2 860 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 ANKRD20A2Q5SQ80 823 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 ANKRD20A1Q5TYW2 823 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 ANKRD20A3Q5VUR7 823 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 STEAP4Q687X5 459 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 PAXIP1Q6ZW49 1069 aaPredicted RBP15.34■□□□□ 0.05
NUP54-217ENST00000514987 PRPF39Q86UA1 669 aaKnown RBP15.34■□□□□ 0.05
NUP54-217ENST00000514987 RSPH3Q86UC2 560 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 RNF139Q8WU17 664 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 SOCS4Q8WXH5 440 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 WNT8BQ93098 351 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 NTAN1Q96AB6 310 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 ERP27Q96DN0 273 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 STAMBPL1Q96FJ0 436 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 MED10Q9BTT4 135 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 ADAM33Q9BZ11 813 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 ARHGEF4Q9NR80 690 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 CHST12Q9NRB3 414 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 BAIAP2L1Q9UHR4 511 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 MAD1L1Q9Y6D9 718 aa15.34■□□□□ 0.05
NUP54-217ENST00000514987 SDR42E2A6NKP2 422 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 C9IYK1 514 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 TKTP29401 623 aaKnown RBP15.33■□□□□ 0.05
NUP54-217ENST00000514987 SERPINB4P48594 390 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 HCAR3P49019 387 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 ATXN1P54253 815 aaKnown RBP15.33■□□□□ 0.05
NUP54-217ENST00000514987 GJA9P57773 515 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 KCNJ2P63252 427 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 DEUP1Q05D60 604 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 STXBP5Q5T5C0 1151 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 ZNF618Q5T7W0 954 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 LRRC8BQ6P9F7 803 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 ZNF449Q6P9G9 518 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 TIFABQ6ZNK6 161 aa15.33■□□□□ 0.05
NUP54-217ENST00000514987 ZNF534Q76KX8 674 aa15.33■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms