RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 SAGE1Q9NXZ1 904 aa5.9□□□□□ -1.46
HMGCS1-207ENST00000514610 SERGEFQ9UGK8 458 aa5.9□□□□□ -1.46
HMGCS1-207ENST00000514610 HMX3A6NHT5 357 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 B9A039 149 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 AKAP8O43823 692 aaKnown RBP5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 EXOC3O60645 756 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 FAM155BO75949 473 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 C1QL1O75973 258 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 PEPDP12955 493 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 GALNSP34059 522 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 SF3A3Q12874 501 aaKnown RBP eCLIP5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 RAPGEF1Q13905 1077 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 FAM187BQ17R55 369 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 NFRKBQ6P4R8 1299 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 KRT27Q7Z3Y8 459 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 MOGAT3Q86VF5 341 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 C12orf76Q8N812 135 aaPredicted RBP5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 MAFAQ8NHW3 353 aaPredicted RBP5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 CHFRQ96EP1 664 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 SCLT1Q96NL6 688 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 EIF3CQ99613 913 aaKnown RBP5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 FAM167BQ9BTA0 163 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 USP29Q9HBJ7 922 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 VPS4AQ9UN37 437 aa5.89□□□□□ -1.47
HMGCS1-207ENST00000514610 TCRBV5S1A1TA0A578 114 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 SLC38A8A6NNN8 435 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 H0Y3Z8 333 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 CYP21A2P08686 494 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 ZNF37AP17032 561 aaPredicted RBP5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 ATF7P17544 494 aaPredicted RBP5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 THBS4P35443 961 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 IGHMBP2P38935 993 aaKnown RBP5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 CCDC15Q0P6D6 951 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 CUL4BQ13620 913 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 AAK1Q2M2I8 961 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 ERCC6LQ2NKX8 1250 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 AKNAD1Q5T1N1 836 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 CEP85Q6P2H3 762 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 ACSM6Q6P461 480 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 TRIM72Q6ZMU5 477 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 RAB11FIP2Q7L804 512 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 NGDNQ8NEJ9 315 aaKnown RBP5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 SARAFQ96BY9 339 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 TRAPPC9Q96Q05 1148 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 ELAC1Q9H777 363 aaKnown RBP5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 FBXO28Q9NVF7 368 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 SH3BP4Q9P0V3 963 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 FZD4Q9ULV1 537 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 C19orf53Q9UNZ5 99 aaPredicted RBP5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 LZTS1Q9Y250 596 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 ZBTB1Q9Y2K1 713 aa5.88□□□□□ -1.47
HMGCS1-207ENST00000514610 NHLRC4P0CG21 123 aaPredicted RBP5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 MMP8P22894 467 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 ADD2P35612 726 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 PPM1FP49593 454 aaPredicted RBP5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 ARL4CP56559 192 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 CFHR3Q02985 330 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 PPFIA1Q13136 1202 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 GALNTL6Q49A17 601 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 DENND2CQ68D51 928 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 ARHGEF25Q86VW2 580 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 CPXCR1Q8N123 301 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 FAM98AQ8NCA5 519 aaKnown RBP5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 CSGALNACT1Q8TDX6 532 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 HMGB4Q8WW32 186 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 RUBCNQ92622 972 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 DAZAP1Q96EP5 407 aaKnown RBP5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 CINPQ9BW66 212 aaPredicted RBP5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 CDCP1Q9H5V8 836 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 CCDC134Q9H6E4 229 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 SEMA4GQ9NTN9 838 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 ABHD10Q9NUJ1 306 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 ARPP21Q9UBL0 812 aaPredicted RBP5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 FEM1BQ9UK73 627 aa5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 UBE2J1Q9Y385 318 aaPredicted RBP5.87□□□□□ -1.47
HMGCS1-207ENST00000514610 FNDC1Q4ZHG4 1894 aaPredicted RBP5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 TARM1B6A8C7 271 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 FYB1O15117 783 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 NKX2-8O15522 239 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 MT-CO3P00414 261 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 JAK3P52333 1124 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 SOX10P56693 466 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 HOXA4Q00056 320 aaPredicted RBP5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 GAB1Q13480 694 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 BIRC3Q13489 604 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 AWAT1Q58HT5 328 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 ANKRD40Q6AI12 368 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 RFX8Q6ZV50 586 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 ZNF354CQ86Y25 554 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 FAM71DQ8N9W8 422 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 OR52L2PQ8NGH6 319 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 SPPL3Q8TCT6 385 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 PPM1EQ8WY54 764 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 C3orf49Q96BT1 292 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 GCC1Q96CN9 775 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 TRMT61AQ96FX7 289 aaKnown RBP5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 REXO5Q96IC2 774 aaKnown RBP5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 ELOVL1Q9BW60 279 aa5.86□□□□□ -1.47
HMGCS1-207ENST00000514610 BRD8Q9H0E9 1235 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms