RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ATP11AP98196 1134 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 LRRC63Q05C16 580 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 TAF5Q15542 800 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 STX1AQ16623 288 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 SGO2Q562F6 1265 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 CCDC157Q569K6 752 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 EMC10Q5UCC4 262 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 Q6ZS52 159 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 RNF139Q8WU17 664 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 CPA5Q8WXQ8 436 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 RBM41Q96IZ5 413 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 OSBPL9Q96SU4 736 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 SH3GL1Q99961 368 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 ULBP1Q9BZM6 244 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 CIPCQ9C0C6 399 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 RNF38Q9H0F5 515 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 NDST4Q9H3R1 872 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 SPATA6Q9NWH7 488 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 SORCS3Q9UPU3 1222 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 NLRC5Q86WI3 1866 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 SLC12A8A0AV02 714 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 LRRC10BA6NIK2 292 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 USP27XA6NNY8 438 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 M0QZQ0 153 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 OAZ2O95190 189 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 IFNAR2P48551 515 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 FILIP1LQ4L180 1135 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 PHLDB3Q6NSJ2 640 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 ITIH5Q86UX2 942 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 LRRC52Q8N7C0 313 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 MLKLQ8NB16 471 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 LRRN4CLQ8ND94 238 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 C7orf57Q8NEG2 295 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 MYCBPAPQ8TBZ2 947 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 SPPL2BQ8TCT7 592 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 TFAP2BQ92481 460 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 LRRC3BQ96PB8 259 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 TPSD1Q9BZJ3 242 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 DACH1Q9UI36 760 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 TSC22D4Q9Y3Q8 395 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 TBC1D3BA6NDS4 549 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 AGRPO00253 132 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 FOXN3O00409 490 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 P4HA2O15460 535 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 NCAM1P13591 858 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 GNA15P30679 374 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 SRSF5Q13243 272 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 PDE1CQ14123 709 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 BTBD8Q5XKL5 378 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 SCYL2Q6P3W7 929 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 SLC47A2Q86VL8 602 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 SFTPA1Q8IWL2 248 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 ATRIPQ8WXE1 791 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 ATOH1Q92858 354 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 RSPRY1Q96DX4 576 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 CHFRQ96EP1 664 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 TMEM176AQ96HP8 235 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 NECTIN4Q96NY8 510 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 ACBD6Q9BR61 282 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 TBC1D17Q9HA65 648 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 RXFP1Q9HBX9 757 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 LNPEPQ9UIQ6 1025 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 MOSPD1Q9UJG1 213 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 IRAK3Q9Y616 596 aa8.22□□□□□ -1.09
LIMCH1-219ENST00000514096 LRRD1A4D1F6 860 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 TMEM221A6NGB7 291 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 NEDD8-MDP1E9PL57 170 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 M0R296 226 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 ERLIN1O75477 346 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 KRT14P02533 472 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 CSH1P0DML2 217 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 CSH2P0DML3 217 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 CYP3A5P20815 502 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 ABCB4P21439 1286 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 ASPAP45381 313 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 KRT31Q15323 416 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 TOMM20Q15388 145 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 TCEA2Q15560 299 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 SMUG1Q53HV7 270 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 RFWD3Q6PCD5 774 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 DENND1CQ8IV53 801 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 MYO1HQ8N1T3 1032 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 CFAP52Q8N1V2 620 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 RLN3Q8WXF3 142 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 SMOQ99835 787 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 DMAP1Q9NPF5 467 aaPredicted RBP8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 TDP1Q9NUW8 608 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 AJAP1Q9UKB5 411 aaPredicted RBP8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 CDH9Q9ULB4 789 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 ANK1P16157 1881 aa8.21□□□□□ -1.09
LIMCH1-219ENST00000514096 ZNF197O14709 1029 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 HAPLN1P10915 354 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 STIP1P31948 543 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 PCK1P35558 622 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 BNIP1Q12981 228 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 XKR4Q5GH76 650 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 TXNDC11Q6PKC3 985 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 TCEAL8Q8IYN2 117 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 TRIM58Q8NG06 486 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms