RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 GSTT1P30711 240 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 MLH1P40692 756 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 R3HDM1Q15032 1099 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 SV2CQ496J9 727 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 ZNF484Q5JVG2 852 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 DPY19L2Q6NUT2 758 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 DRICH1Q6PGQ1 229 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 RINLQ6ZS11 566 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 ARCQ7LC44 396 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 RNF148Q8N7C7 305 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 C10orf82Q8WW14 230 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 TSPAN17Q96FV3 270 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 ECSITQ9BQ95 431 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 SP110Q9HB58 689 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 DDIT4Q9NX09 232 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 KLK14Q9P0G3 267 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 APPL1Q9UKG1 709 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 UBQLN1Q9UMX0 589 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 SNCAIPQ9Y6H5 919 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 TIAM2Q8IVF5 1701 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 ARHGEF37A1IGU5 675 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 SPDYE16A6NNV3 312 aaPredicted RBP8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 PRR5-ARHGAP8B1AHC4 643 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 RNF103O00237 685 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 SNX2O60749 519 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 AP1G2O75843 785 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 UPP2O95045 317 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 ZBTB7AO95365 584 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 C6orf222P0C671 652 aaPredicted RBP8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 UBA1P22314 1058 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 TAF6P49848 677 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 ARPP19P56211 112 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 ARHGAP8P85298 464 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 ROR2Q01974 943 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 BST2Q10589 180 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 PCSK7Q16549 785 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 ZC3H12AQ5D1E8 599 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 FAM183BPQ6ZVS7 135 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 THEM5Q8N1Q8 247 aa8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 ACO2Q99798 780 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 STX18Q9P2W9 335 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 CICQ96RK0 1608 aaPredicted RBP8.65□□□□□ -1.03
LIMCH1-216ENST00000512820 UBA6A0AVT1 1052 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 TGDSO95455 350 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 NFICP08651 508 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CCNB1P14635 433 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 PLOD1Q02809 727 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 LAMC2Q13753 1193 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 PTK2BQ14289 1009 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 GSTA3Q16772 222 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 DCAF4L1Q3SXM0 396 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 LINC00523Q86TU6 105 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 SNX32Q86XE0 403 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 SIAH1Q8IUQ4 282 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 MAB21L3Q8N8X9 362 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 RBM15BQ8NDT2 890 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CYGBQ8WWM9 190 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 L3MBTL3Q96JM7 780 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CATSPER2Q96P56 530 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 GCNAQ96QF7 691 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CDRT15Q96T59 188 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 EBNA1BP2Q99848 306 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 SNRNP25Q9BV90 132 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 PLLPQ9Y342 182 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 PPME1Q9Y570 386 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 PCDHA11Q9Y5I1 949 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 SNX13Q9Y5W8 968 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 KCNK1O00180 336 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 STRNO43815 780 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 ZNF862O60290 1169 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 ZMPSTE24O75844 475 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 TOMM70O94826 608 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 FAM200BP0CF97 657 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 ERVK-10P10266 1014 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 SOX11P35716 441 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 HIRAP54198 1017 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 TSPY1Q01534 308 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 WASHC5Q12768 1159 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 KRT72Q14CN4 511 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 FAM83EQ2M2I3 478 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 NOTUMQ6P988 496 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 RFWD3Q6PCD5 774 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 DHDDSQ86SQ9 333 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 NUP93Q8N1F7 819 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 OR6J1Q8NGC5 347 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 SKA2Q8WVK7 121 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CPNE1Q99829 537 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 KRT82Q9NSB4 513 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 UBP1Q9NZI7 540 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 ACOT9Q9Y305 439 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 MYH6P13533 1939 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 ZBBXA8MT70 800 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 SPATA31C2B4DYI2 1134 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 SLCO1B7G3V0H7 640 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 BIRC5O15392 142 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 E2F6O75461 281 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 SUPT3HO75486 399 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 LYPLA1O75608 230 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 JCHAINP01591 159 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 MPOP05164 745 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms