RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 PTGER1P34995 402 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 VPS41P49754 854 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 CFHR1Q03591 330 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 LRCH2Q5VUJ6 765 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 CCDC144NLQ6NUI1 221 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 SHC4Q6S5L8 630 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 PIK3AP1Q6ZUJ8 805 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 SRLQ86TD4 932 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 RASGRP3Q8IV61 690 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 NANOGP1Q8N7R0 232 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 AKAP1Q92667 903 aaKnown RBP eCLIP6.57□□□□□ -1.36
SF3B1-212ENST00000496458 SIGLEC11Q96RL6 698 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 CCDC187A0A096LP49 1063 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 J3KTA2 159 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 INPPL1O15357 1258 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 SLC3A2P08195 630 aaKnown RBP6.56□□□□□ -1.36
SF3B1-212ENST00000496458 ABCB4P21439 1286 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 MATN1P21941 496 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 MMP8P22894 467 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 GAB1Q13480 694 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 ELF2Q15723 593 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 FAM110CQ1W6H9 321 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 TFAP2DQ7Z6R9 452 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 OVCA2Q8WZ82 227 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 C18orf8Q96DM3 657 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 SGCZQ96LD1 299 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 ZNF48Q96MX3 618 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-212ENST00000496458 FCRL5Q96RD9 977 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 NUDT22Q9BRQ3 303 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 TM2D2Q9BX73 214 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 RNF26Q9BY78 433 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-212ENST00000496458 PCGF6Q9BYE7 350 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 TMEM184CQ9NVA4 438 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 ASNSD1Q9NWL6 643 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 MTMR4Q9NYA4 1195 aa6.56□□□□□ -1.36
SF3B1-212ENST00000496458 CYP19A1P11511 503 aaPredicted RBP6.55□□□□□ -1.36
SF3B1-212ENST00000496458 NDUFS1P28331 727 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 THBS4P35443 961 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 ID2Q02363 134 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 HNRNPA0Q13151 305 aaKnown RBP6.55□□□□□ -1.36
SF3B1-212ENST00000496458 RAB30Q15771 203 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 KRT27Q7Z3Y8 459 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 OR52L2PQ8NGH6 319 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 DEPTORQ8TB45 409 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 PIGOQ8TEQ8 1089 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 IPO4Q8TEX9 1081 aaKnown RBP6.55□□□□□ -1.36
SF3B1-212ENST00000496458 FCRL4Q96PJ5 515 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 NECTIN3Q9NQS3 549 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 FSCN3Q9NQT6 498 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 TM7SF3Q9NS93 570 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 RXFP3Q9NSD7 469 aa6.55□□□□□ -1.36
SF3B1-212ENST00000496458 TTC34A8MYJ7 566 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 M0QZQ0 153 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 PRYO14603 147 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 HNRNPDLO14979 420 aaKnown RBP6.54□□□□□ -1.36
SF3B1-212ENST00000496458 CTIFO43310 598 aaKnown RBP6.54□□□□□ -1.36
SF3B1-212ENST00000496458 PLAUP00749 431 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 FGBP02675 491 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 PLCD1P51178 756 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 RPS13P62277 151 aaKnown RBP6.54□□□□□ -1.36
SF3B1-212ENST00000496458 HSF1Q00613 529 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 MAP9Q49MG5 647 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 SLC9C1Q4G0N8 1177 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 EPHA10Q5JZY3 1008 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 ACSM6Q6P461 480 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 GLCCI1Q86VQ1 547 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 TTC30AQ86WT1 665 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 FAM186BQ8IYM0 893 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 C16orf52Q8NHV5 167 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 PIGKQ92643 395 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 COQ8BQ96D53 544 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 CDCP1Q9H5V8 836 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 EPS8L2Q9H6S3 715 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 AGO4Q9HCK5 861 aaKnown RBP6.54□□□□□ -1.36
SF3B1-212ENST00000496458 MLXIPLQ9NP71 852 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 SLC39A10Q9ULF5 831 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 CA14Q9ULX7 337 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 DTNAQ9Y4J8 743 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 AFG3L2Q9Y4W6 797 aa6.54□□□□□ -1.36
SF3B1-212ENST00000496458 SIRT4Q9Y6E7 314 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-212ENST00000496458 PNMA6EA0A0J9YXQ4 647 aa6.53□□□□□ -1.36
SF3B1-212ENST00000496458 DHHO43323 396 aa6.53□□□□□ -1.36
SF3B1-212ENST00000496458 PLA2G6O60733 806 aa6.53□□□□□ -1.36
SF3B1-212ENST00000496458 IDUAP35475 653 aa6.53□□□□□ -1.36
SF3B1-212ENST00000496458 CSHL1Q14406 222 aa6.53□□□□□ -1.36
SF3B1-212ENST00000496458 RBMS2Q15434 407 aaKnown RBP6.53□□□□□ -1.36
SF3B1-212ENST00000496458 C10orf25Q5T742 122 aa6.53□□□□□ -1.36
SF3B1-212ENST00000496458 ARL6IP4Q66PJ3 421 aaKnown RBP6.53□□□□□ -1.36
SF3B1-212ENST00000496458 MSANTD2Q6P1R3 559 aa6.53□□□□□ -1.36
SF3B1-212ENST00000496458 KYAT3Q6YP21 454 aaKnown RBP6.53□□□□□ -1.36
SF3B1-212ENST00000496458 MUL1Q969V5 352 aa6.53□□□□□ -1.36
SF3B1-212ENST00000496458 SCNM1Q9BWG6 230 aa6.53□□□□□ -1.36
SF3B1-212ENST00000496458 STK33Q9BYT3 514 aa6.53□□□□□ -1.36
SF3B1-212ENST00000496458 HELLSQ9NRZ9 838 aa6.53□□□□□ -1.36
SF3B1-212ENST00000496458 PCDH17O14917 1159 aa6.52□□□□□ -1.37
SF3B1-212ENST00000496458 NPC1O15118 1278 aa6.52□□□□□ -1.37
SF3B1-212ENST00000496458 PLIN1O60240 522 aa6.52□□□□□ -1.37
SF3B1-212ENST00000496458 EIF5BO60841 1220 aaKnown RBP6.52□□□□□ -1.37
SF3B1-212ENST00000496458 TAF5LO75529 589 aa6.52□□□□□ -1.37
SF3B1-212ENST00000496458 CTSAP10619 480 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms