RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PRKAR2AP13861 404 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 AMPD1P23109 780 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ISLR2Q6UXK2 745 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 INPP5DQ92835 1189 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PPWD1Q96BP3 646 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZNF560Q96MR9 790 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZIC5Q96T25 663 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 BARX2Q9UMQ3 279 aaPredicted RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 UBQLN1Q9UMX0 589 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TNFSF13BQ9Y275 285 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MROH7Q68CQ1 1323 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZBBXA8MT70 800 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CFLARO15519 480 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 GAS2O43903 313 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 AOC2O75106 756 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 AVILO75366 819 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NCF2P19878 526 aaPredicted RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DNAJB2P25686 324 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MMP13P45452 471 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TRIM32Q13049 653 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PCSK7Q16549 785 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MCUQ8NE86 351 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SPON2Q9BUD6 331 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NIFKQ9BYG3 293 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NDEL1Q9GZM8 345 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TMEM134Q9H6X4 195 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PGAP2Q9UHJ9 254 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CPSF3Q9UKF6 684 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 BCORQ6W2J9 1755 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 GOLGA8TH3BQL2 631 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 WFS1O76024 890 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ENDOD1O94919 500 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 APOEP02649 317 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ERBB2P04626 1255 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 USP17L7P0C7H9 530 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 BDNFP23560 247 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ANXA13P27216 316 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ARL4CP56559 192 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TFDP2Q14188 446 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SLC5A9Q2M3M2 681 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TFDP3Q5H9I0 405 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SH3D19Q5HYK7 790 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 FAM183BPQ6ZVS7 135 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RAPH1Q70E73 1250 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PGBD4Q96DM1 585 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ATXN3LQ9H3M9 355 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ST3GAL5Q9UNP4 418 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SMG5Q9UPR3 1016 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SH3GLB1Q9Y371 365 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 COL5A3P25940 1745 aaPredicted RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DOCK2Q92608 1830 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DNAH12Q6ZR08 3092 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 APOL1O14791 398 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TADA2AO75478 443 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LCA5LO95447 670 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PSMG1O95456 288 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 S100BP04271 92 aaPredicted RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 THP07101 528 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CCNFP41002 786 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 GALK1P51570 392 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 C16orf72Q14CZ0 275 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MGAT5BQ3V5L5 792 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RAB6CQ53S08 254 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NOL9Q5SY16 702 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 IYDQ6PHW0 289 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 B3GNT9Q6UX72 402 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DENND5BQ6ZUT9 1274 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TSSK1BQ9BXA7 367 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RAB6CQ9H0N0 254 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CXCL16Q9H2A7 254 aa11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 UTP6Q9NYH9 597 aaKnown RBP11.09□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TSPAN1O60635 241 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GMNNO75496 209 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PGM3O95394 542 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MCF2P10911 925 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 VDRP11473 427 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 VAV1P15498 845 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TKTL1P51854 596 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CCL23P55773 120 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 FCGRTP55899 365 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CAV1Q03135 178 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MPP3Q13368 585 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 IQSEC1Q6DN90 963 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PCGF5Q86SE9 256 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZNF677Q86XU0 584 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RYBPQ8N488 228 aaPredicted RBP11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PIWIL1Q96J94 861 aaKnown RBP11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TSNARE1Q96NA8 513 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RHOBTB2Q9BYZ6 727 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DCLK3Q9C098 648 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 UBAP1Q9NZ09 502 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LMCD1Q9NZU5 365 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 HMGCRP04035 888 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 F7P08709 466 aaPredicted RBP11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 HOXC6P09630 235 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TPBGLP0DKB5 382 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ICAM3P32942 547 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LIN52Q52LA3 116 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LVRNQ6Q4G3 990 aa11.08□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CRLF3Q8IUI8 442 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms