RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CACNA2D2Q9NY47 1150 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 MARCH2Q9P0N8 246 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 PLA2G4CQ9UP65 541 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 HPSEQ9Y251 543 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 NEUROG3Q9Y4Z2 214 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 STON1Q9Y6Q2 735 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 MYO16Q9Y6X6 1858 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 A0A1W2PQ27 194 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 A0A1W2PQ64 194 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 TYW5A2RUC4 315 aaKnown RBP12.13□□□□□ -0.47
COL6A3-213ENST00000493475 SMC2O95347 1197 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 HMBSP08397 361 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 NDUFA8P51970 172 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 BCAT1P54687 386 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 YWHAGP61981 247 aaKnown RBP eCLIP12.13□□□□□ -0.47
COL6A3-213ENST00000493475 SFSWAPQ12872 951 aaKnown RBP12.13□□□□□ -0.47
COL6A3-213ENST00000493475 STIM1Q13586 685 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 MPPE1Q53F39 396 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 PPP1R26Q5T8A7 1209 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-213ENST00000493475 TCERG1LQ5VWI1 586 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 SERPINA13PQ6UXR4 307 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 Q6ZNB5 142 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 KRBA2Q6ZNG9 492 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 GPRIN1Q7Z2K8 1008 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 SIX6OS1Q8N1H7 587 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 CPXM2Q8N436 756 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 KDF1Q8NAX2 398 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-213ENST00000493475 ANKRD52Q8NB46 1076 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 SIPA1Q96FS4 1042 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 ZNF419Q96HQ0 510 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-213ENST00000493475 SCNM1Q9BWG6 230 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 CIPCQ9C0C6 399 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 FBRSQ9HAH7 460 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 NMUR1Q9HB89 426 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 CAPN10Q9HC96 672 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 DNAAF2Q9NVR5 837 aaKnown RBP12.13□□□□□ -0.47
COL6A3-213ENST00000493475 KIAA1257Q9ULG3 409 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 MAPK8IP1Q9UQF2 711 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 USP3Q9Y6I4 520 aa12.13□□□□□ -0.47
COL6A3-213ENST00000493475 LAMA1P25391 3075 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 CHD6Q8TD26 2715 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 NUP205Q92621 2012 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 A0A1B0GTW7 788 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 SLC12A8A0AV02 714 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 PRRT4C9JH25 899 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 HHLA1C9JL84 531 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 SLC16A3O15427 465 aaKnown RBP12.12□□□□□ -0.47
COL6A3-213ENST00000493475 CER1O95813 267 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 ZBED1O96006 694 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 PENKP01210 267 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-213ENST00000493475 NCAM1P13591 858 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 TBXAS1P24557 533 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-213ENST00000493475 TKTL1P51854 596 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 MFAP3P55082 362 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 PPP3CAQ08209 521 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 DPYDQ12882 1025 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 SGO2Q562F6 1265 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 DCAF17Q5H9S7 520 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-213ENST00000493475 ARHGAP17Q68EM7 881 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 TOGARAM2Q6ZUX3 1019 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 DENND1CQ8IV53 801 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 DEFB119Q8N690 84 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 FRMD1Q8N878 549 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 WFIKKN2Q8TEU8 576 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 ELMO3Q96BJ8 720 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 TWNKQ96RR1 684 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 NUP58Q9BVL2 599 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 IRX2Q9BZI1 471 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-213ENST00000493475 PCED1AQ9H1Q7 454 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 APOBEC3GQ9HC16 384 aaKnown RBP12.12□□□□□ -0.47
COL6A3-213ENST00000493475 OSER1Q9NX31 292 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 PLK2Q9NYY3 685 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 THAP10Q9P2Z0 257 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-213ENST00000493475 FBXO10Q9UK96 956 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 NUDT5Q9UKK9 219 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 ZMIZ1Q9ULJ6 1067 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 APOBEC2Q9Y235 224 aaKnown RBP12.12□□□□□ -0.47
COL6A3-213ENST00000493475 HBS1LQ9Y450 684 aaKnown RBP12.12□□□□□ -0.47
COL6A3-213ENST00000493475 RAD54BQ9Y620 910 aa12.12□□□□□ -0.47
COL6A3-213ENST00000493475 ABCA7Q8IZY2 2146 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 FAM237AA0A1B0GTK4 181 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 C1QTNF9BB2RNN3 333 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 XPO1O14980 1071 aaKnown RBP12.11□□□□□ -0.47
COL6A3-213ENST00000493475 MDM4O15151 490 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 TRIM24O15164 1050 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 GREM1O60565 184 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 LATS1O95835 1130 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 ATP5BP06576 529 aaKnown RBP12.11□□□□□ -0.47
COL6A3-213ENST00000493475 EPHX1P07099 455 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 CISD3P0C7P0 127 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 C1QTNF9P0C862 333 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 SETSIPP0DME0 302 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 CD19P15391 556 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 PPP1R2P41236 205 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 FKBP3Q00688 224 aaKnown RBP12.11□□□□□ -0.47
COL6A3-213ENST00000493475 PDE4CQ08493 712 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 BST2Q10589 180 aaKnown RBP12.11□□□□□ -0.47
COL6A3-213ENST00000493475 SUZ12Q15022 739 aaKnown RBP12.11□□□□□ -0.47
COL6A3-213ENST00000493475 TEAD4Q15561 434 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 FUT11Q495W5 492 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms