RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 FGFR1OP2Q9NVK5 253 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 THSD7BQ9C0I4 1608 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 A0A0U1RQF3 1178 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 GOLGA6L7A0A1B0GV03 622 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 TCRBV9S1A1TA0A576 114 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 YJEFN3A6XGL0 299 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 E7ENQ6 273 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 I3L4J1 428 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 POMCP01189 267 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 APRTP07741 180 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 NME3Q13232 169 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 MZB1Q8WU39 189 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 TGS1Q96RS0 853 aaKnown RBP21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 CNGB3Q9NQW8 809 aa21.85■■□□□ 1.09
CCDC88B-208ENST00000492980 TMEM88BA6NKF7 163 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 HHLA1C9JL84 531 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 H3BRJ5 948 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 MFSD11O43934 449 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 SPAG6O75602 509 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 ASMTLO95671 621 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 OAS1P00973 400 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 ODC1P11926 461 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 VAV1P15498 845 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 ELNP15502 786 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 PCSK1P29120 753 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 MSH2P43246 934 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 VPS52Q8N1B4 723 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 ANKS4BQ8N8V4 417 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 MCUQ8NE86 351 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 CYTH2Q99418 400 aa21.84■■□□□ 1.09
CCDC88B-208ENST00000492980 HACD1B0YJ81 288 aa21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 C9IYK1 514 aa21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 TYROBPO43914 113 aa21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 SNX3O60493 162 aa21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 ALDH1A1P00352 501 aa21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 IBSPP21815 317 aaPredicted RBP21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 YWHAGP61981 247 aaKnown RBP eCLIP21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 SF3A3Q12874 501 aaKnown RBP eCLIP21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 NUGGCQ68CJ6 796 aa21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 HEATR6Q6AI08 1181 aaKnown RBP21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 CD300LGQ6UXG3 332 aa21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 SLC7A14Q8TBB6 771 aa21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 TFB1MQ8WVM0 346 aaKnown RBP21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 PPM1EQ8WY54 764 aa21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 SMARCD1Q96GM5 515 aa21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 ADAM2Q99965 735 aa21.83■■□□□ 1.09
CCDC88B-208ENST00000492980 TPSB2P20231 275 aa21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 FOXN2P32314 431 aa21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 IL9RQ01113 521 aa21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 PTK7Q13308 1070 aa21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 TPSAB1Q15661 275 aa21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 TRIM71Q2Q1W2 868 aaKnown RBP21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 PAN2Q504Q3 1202 aaKnown RBP21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 HTR3CQ8WXA8 447 aa21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 MYLPFQ96A32 169 aa21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 RHOBTB2Q9BYZ6 727 aa21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 SSU72Q9NP77 194 aaKnown RBP21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 PNPLA8Q9NP80 782 aa21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 TRMT13Q9NUP7 481 aaKnown RBP21.83■■□□□ 1.08
CCDC88B-208ENST00000492980 CAPN9O14815 690 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 B3GAT3O94766 335 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 USP17L7P0C7H9 530 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 RPA3P35244 121 aaPredicted RBP21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 BRCC3P46736 316 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 GRIK3Q13003 919 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 PAXIP1Q6ZW49 1069 aaPredicted RBP21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 ZNF534Q76KX8 674 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 BZW1Q7L1Q6 419 aaKnown RBP21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 BHLHA9Q7RTU4 235 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 CTU1Q7Z7A3 348 aaKnown RBP21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 CCT6BQ92526 530 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 CFAP36Q96G28 342 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 HHIPL1Q96JK4 782 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 SLC9A7Q96T83 725 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 CSNK1G1Q9HCP0 422 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 NR2E3Q9Y5X4 410 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 SF3B1O75533 1304 aaKnown RBP eCLIP21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 FSBPO95073 299 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 CYP11A1P05108 521 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 TAC1P20366 129 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 MAGEA3P43357 314 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 DPYSQ14117 519 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 SPRED3Q2MJR0 410 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 KBTBD12Q3ZCT8 623 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 FAM26DQ5JW98 314 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 PCSK9Q8NBP7 692 aaKnown RBP21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 ADAM32Q8TC27 787 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 NTAN1Q96AB6 310 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 PGBD4Q96DM1 585 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 LGMNQ99538 433 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 WDR6Q9NNW5 1121 aaKnown RBP21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 RNF186Q9NXI6 227 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 TTLL3Q9Y4R7 772 aa21.82■■□□□ 1.08
CCDC88B-208ENST00000492980 CREB3O43889 395 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 C1QAP02745 245 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 KRT4P19013 534 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 CA4P22748 312 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 ADRA1BP35368 520 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 SEMA5AQ13591 1074 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 SPARCL1Q14515 664 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms