RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 TRAV34A0A0B4J273 112 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 DENND3A2RUS2 1198 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 SH3D21A4FU49 640 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 GOLGA8IPA6NC78 632 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 TMEM247A6NEH6 219 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 MFSD2BA6NFX1 497 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 URADA6NGE7 173 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 H3BQV1 296 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 AGRPO00253 132 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 CBX4O00257 560 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF263O14978 683 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ATP2A1O14983 1001 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 CLDN3O15551 220 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 TRAPPC3O43617 180 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 PHACTR2O75167 634 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 FAM155BO75949 473 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 KRT37O76014 449 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 FYNP06241 537 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ACAA1P09110 424 aaPredicted RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ESRRAP11474 423 aaPredicted RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 PRPS2P11908 318 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ODC1P11926 461 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 HOXD8P13378 290 aaPredicted RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 LAMP2P13473 410 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 KRT5P13647 590 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 PRKCAP17252 672 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 TGM1P22735 817 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 CPN2P22792 545 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 U2AF2P26368 475 aaKnown RBP eCLIP4.38□□□□□ -1.711e-6■■■□□ 19.1
BRCA1-220ENST00000492859 PCSK1P29120 753 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 TM4SF1P30408 202 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 PCGF2P35227 344 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 MAGEA9P43362 315 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 AFMP43652 599 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 POLGP54098 1239 aaPredicted RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ADKP55263 362 aaKnown RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 NPEPPSP55786 919 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 TAS2R40P59535 323 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 GPX6P59796 221 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 LMAN2Q12907 356 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF177Q13360 481 aaPredicted RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 RAPSNQ13702 412 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 DDX39BQ13838 428 aaKnown RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 RCN2Q14257 317 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 LPIN1Q14693 890 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 SNX17Q15036 470 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 POU4F3Q15319 338 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ZMYND11Q15326 602 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 SEC23AQ15436 765 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 TBCEQ15813 527 aaPredicted RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 NFIL3Q16649 462 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 UGP2Q16851 508 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 FAM187BQ17R55 369 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 USH1GQ495M9 461 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 SV2CQ496J9 727 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 SGO2Q562F6 1265 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ZRANB3Q5FWF4 1079 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 CACHD1Q5VU97 1274 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ANKRD40Q6AI12 368 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 METAP1DQ6UB28 335 aaPredicted RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 NSMFQ6X4W1 530 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 USP49Q70CQ1 688 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 USP45Q70EL2 814 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 PLPPR4Q7Z2D5 763 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 KBTBD6Q86V97 674 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 STX12Q86Y82 276 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 SCN4BQ8IWT1 228 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 REXO1L1PQ8IX06 675 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 AOPEPQ8N6M6 819 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 OR6J1Q8NGC5 347 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 OR13C2Q8NGS9 318 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ENKURQ8TC29 256 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 GPT2Q8TD30 523 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 SNX29Q8TEQ0 813 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 IRGQQ8WZA9 623 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 MR1Q95460 341 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 RFKQ969G6 155 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF653Q96CK0 615 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 MRPL38Q96DV4 380 aaKnown RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 IFT43Q96FT9 208 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 HES6Q96HZ4 224 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 NGLY1Q96IV0 654 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 FER1L6-AS2Q96M78 137 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 TRERF1Q96PN7 1200 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ALS2CR12Q96Q35 445 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 NR1H4Q96RI1 486 aaPredicted RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 P2RX7Q99572 595 aaKnown RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 PRPF18Q99633 342 aaKnown RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 TM9SF2Q99805 663 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 CIB1Q99828 191 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 FAM118BQ9BPY3 351 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 HEPHQ9BQS7 1158 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 CINPQ9BW66 212 aaPredicted RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 LGR4Q9BXB1 951 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 PARD6BQ9BYG5 372 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 SHCBP1LQ9BZQ2 653 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 SH2D4AQ9H788 454 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 COQ10BQ9H8M1 238 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 C12orf10Q9HB07 376 aa4.38□□□□□ -1.71
BRCA1-220ENST00000492859 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms