RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 PLA2G4AP47712 749 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 COPAP53621 1224 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 AP3M2P53677 418 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 MFAP3P55082 362 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 SLC39A14Q15043 492 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 EIF4HQ15056 248 aaKnown RBP8.63□□□□□ -1.03
USP39-216ENST00000490193 SMAD1Q15797 465 aaKnown RBP8.63□□□□□ -1.03
USP39-216ENST00000490193 E2F4Q16254 413 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 PTPRNQ16849 979 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 ZNF699Q32M78 642 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 ZNF667Q5HYK9 610 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 FAM26FQ5R3K3 315 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 FYB2Q5VWT5 728 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 UNC93AQ86WB7 457 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 TMPRSS6Q8IU80 811 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 RBBP8NLQ8NC74 664 aaPredicted RBP8.63□□□□□ -1.03
USP39-216ENST00000490193 UCMAQ8WVF2 138 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 SIPA1Q96FS4 1042 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 LRIG1Q96JA1 1093 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 NUP58Q9BVL2 599 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 SDCBP2Q9H190 292 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 CUEDC2Q9H467 287 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.63□□□□□ -1.03
USP39-216ENST00000490193 ZNF510Q9Y2H8 683 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 PCDHA5Q9Y5H7 936 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 GOLGA4Q13439 2230 aaKnown RBP8.63□□□□□ -1.03
USP39-216ENST00000490193 CFAP46Q8IYW2 2715 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 KNL1Q8NG31 2342 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 VPS37CA5D8V6 355 aaPredicted RBP8.62□□□□□ -1.03
USP39-216ENST00000490193 TRABD2BA6NFA1 517 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 CLIC2O15247 247 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 TNFSF14O43557 240 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 PCDHGA12O60330 932 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 STC2O76061 302 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 VNN1O95497 513 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 CCDC130P13994 396 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 PDCP20941 246 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 CHKAP35790 457 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 GRIA4P48058 902 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 CYP2J2P51589 502 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 AFF3P51826 1226 aaKnown RBP8.62□□□□□ -1.03
USP39-216ENST00000490193 MAP3K7CLP57077 242 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 CYP4F3Q08477 520 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 ORC1Q13415 861 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 NCOA4Q13772 614 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 ZNF234Q14588 700 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 SUZ12Q15022 739 aaKnown RBP8.62□□□□□ -1.03
USP39-216ENST00000490193 GEN1Q17RS7 908 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 CLEC20AQ6ZU45 233 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 GPRIN1Q7Z2K8 1008 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 ACOT1Q86TX2 421 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 ADAM32Q8TC27 787 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 PLEKHO2Q8TD55 490 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 SLC2A14Q8TDB8 520 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 RHBDD1Q8TEB9 315 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 PARD3BQ8TEW8 1205 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 TMEM174Q8WUU8 243 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 PRCCQ92733 491 aaPredicted RBP8.62□□□□□ -1.03
USP39-216ENST00000490193 ERLEC1Q96DZ1 483 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 PIWIL1Q96J94 861 aaKnown RBP8.62□□□□□ -1.03
USP39-216ENST00000490193 UBL7Q96S82 380 aaPredicted RBP8.62□□□□□ -1.03
USP39-216ENST00000490193 HNRNPABQ99729 332 aaKnown RBP8.62□□□□□ -1.03
USP39-216ENST00000490193 SLC2A11Q9BYW1 496 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 PANK2Q9BZ23 570 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 MIR1-1HGQ9H1L0 117 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 NMUR1Q9HB89 426 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 PLK2Q9NYY3 685 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 EIF2B4Q9UI10 523 aaKnown RBP8.62□□□□□ -1.03
USP39-216ENST00000490193 DNMT3LQ9UJW3 386 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 BTBD3Q9Y2F9 522 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 MAST4O15021 2626 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 NUMA1Q14980 2115 aa8.62□□□□□ -1.03
USP39-216ENST00000490193 A0A1B0GVT2 93 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 A0A1W2PQH9 124 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 EIF4E1BA6NMX2 242 aaKnown RBP8.61□□□□□ -1.03
USP39-216ENST00000490193 LRRIQ3A6PVS8 624 aaPredicted RBP8.61□□□□□ -1.03
USP39-216ENST00000490193 CYP26A1O43174 497 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 SYNCRIPO60506 623 aaKnown RBP8.61□□□□□ -1.03
USP39-216ENST00000490193 PHACTR2O75167 634 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 KLKB1P03952 638 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 C4BPAP04003 597 aaKnown RBP8.61□□□□□ -1.03
USP39-216ENST00000490193 FAM200BP0CF97 657 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 ACADMP11310 421 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 RARGP13631 454 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 P4HA1P13674 534 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 PRKCHP24723 683 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 GRK6P43250 576 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 CASP4P49662 377 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 NDST1P52848 882 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 AMPD3Q01432 767 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 INCA1Q0VD86 236 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 CAMK2GQ13555 558 aaPredicted RBP8.61□□□□□ -1.03
USP39-216ENST00000490193 CUL4AQ13619 759 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 C6orf132Q5T0Z8 1188 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 FAM173BQ6P4H8 233 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 SCARA5Q6ZMJ2 495 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 CCDC186Q7Z3E2 898 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 ANKS1BQ7Z6G8 1248 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 TADA2BQ86TJ2 420 aa8.61□□□□□ -1.03
USP39-216ENST00000490193 FAM217AQ8IXS0 508 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms