RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 CPXM2Q8N436 756 aa24.05■■□□□ 1.44
COL9A3-213ENST00000489045 TCEAL3Q969E4 200 aa24.05■■□□□ 1.44
COL9A3-213ENST00000489045 HBS1LQ9Y450 684 aaKnown RBP24.05■■□□□ 1.44
COL9A3-213ENST00000489045 A0A1W2PQF6 199 aa24.04■■□□□ 1.44
COL9A3-213ENST00000489045 CAVIN2O95810 425 aa24.04■■□□□ 1.44
COL9A3-213ENST00000489045 CYBBP04839 570 aa24.04■■□□□ 1.44
COL9A3-213ENST00000489045 GABRG2P18507 467 aa24.04■■□□□ 1.44
COL9A3-213ENST00000489045 SDE2Q6IQ49 451 aa24.04■■□□□ 1.44
COL9A3-213ENST00000489045 FAM217AQ8IXS0 508 aa24.04■■□□□ 1.44
COL9A3-213ENST00000489045 FRMD1Q8N878 549 aa24.04■■□□□ 1.44
COL9A3-213ENST00000489045 ERLEC1Q96DZ1 483 aa24.04■■□□□ 1.44
COL9A3-213ENST00000489045 MED15Q96RN5 788 aa24.04■■□□□ 1.44
COL9A3-213ENST00000489045 SLC27A6Q9Y2P4 619 aa24.04■■□□□ 1.44
COL9A3-213ENST00000489045 MSI1O43347 362 aaKnown RBP24.03■■□□□ 1.44
COL9A3-213ENST00000489045 KRT5P13647 590 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 DHPSP49366 369 aaPredicted RBP24.03■■□□□ 1.44
COL9A3-213ENST00000489045 HARS2P49590 506 aaKnown RBP24.03■■□□□ 1.44
COL9A3-213ENST00000489045 MFAP3P55082 362 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 MAP7D1Q3KQU3 841 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 CYP2U1Q7Z449 544 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 CREBRFQ8IUR6 639 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 CLEC4CQ8WTT0 213 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 IRGQQ8WZA9 623 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 GABRG3Q99928 467 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 CD248Q9HCU0 757 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 UBE2TQ9NPD8 197 aaPredicted RBP24.03■■□□□ 1.44
COL9A3-213ENST00000489045 CACNA2D2Q9NY47 1150 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 MBD1Q9UIS9 605 aaPredicted RBP24.03■■□□□ 1.44
COL9A3-213ENST00000489045 CNTN6Q9UQ52 1028 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 LAMA1P25391 3075 aa24.03■■□□□ 1.44
COL9A3-213ENST00000489045 MAP3K13O43283 966 aa24.02■■□□□ 1.44
COL9A3-213ENST00000489045 LIMK1P53667 647 aa24.02■■□□□ 1.44
COL9A3-213ENST00000489045 BYSLQ13895 437 aaKnown RBP24.02■■□□□ 1.44
COL9A3-213ENST00000489045 GEN1Q17RS7 908 aa24.02■■□□□ 1.44
COL9A3-213ENST00000489045 KIAA1211LQ6NV74 962 aa24.02■■□□□ 1.44
COL9A3-213ENST00000489045 IPO4Q8TEX9 1081 aaKnown RBP24.02■■□□□ 1.44
COL9A3-213ENST00000489045 DDI1Q8WTU0 396 aa24.02■■□□□ 1.44
COL9A3-213ENST00000489045 HSFY1Q96LI6 401 aa24.02■■□□□ 1.44
COL9A3-213ENST00000489045 CRACR2AQ9BSW2 395 aa24.02■■□□□ 1.44
COL9A3-213ENST00000489045 CALCOCO1Q9P1Z2 691 aa24.02■■□□□ 1.44
COL9A3-213ENST00000489045 CLEC4EQ9ULY5 219 aa24.02■■□□□ 1.44
COL9A3-213ENST00000489045 RAD54BQ9Y620 910 aa24.02■■□□□ 1.44
COL9A3-213ENST00000489045 LTFP02788 710 aa24.01■■□□□ 1.43
COL9A3-213ENST00000489045 MSANTD2Q6P1R3 559 aa24.01■■□□□ 1.43
COL9A3-213ENST00000489045 LPCAT2Q7L5N7 544 aa24.01■■□□□ 1.43
COL9A3-213ENST00000489045 MIS12Q9H081 205 aa24.01■■□□□ 1.43
COL9A3-213ENST00000489045 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 GFRA2O00451 464 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 FBXO21O94952 628 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 NDUFV2P19404 249 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 STPG1Q5TH74 334 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 IL31Q6EBC2 164 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 GJB7Q6PEY0 223 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 TRIM65Q6PJ69 517 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 ARMCX6Q7L4S7 300 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 ANKS1BQ7Z6G8 1248 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 IRF2BP1Q8IU81 584 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 TMEFF1Q8IYR6 380 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 MLKLQ8NB16 471 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 GOLGA1Q92805 767 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 PIWIL1Q96J94 861 aaKnown RBP24■■□□□ 1.43
COL9A3-213ENST00000489045 CLSTN2Q9H4D0 955 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 CKAP5Q14008 2032 aa24■■□□□ 1.43
COL9A3-213ENST00000489045 CNOT1A5YKK6 2376 aaKnown RBP23.99■■□□□ 1.43
COL9A3-213ENST00000489045 WASH3PC4AMC7 463 aa23.99■■□□□ 1.43
COL9A3-213ENST00000489045 TSPAN3O60637 253 aa23.99■■□□□ 1.43
COL9A3-213ENST00000489045 LATS1O95835 1130 aa23.99■■□□□ 1.43
COL9A3-213ENST00000489045 GPD2P43304 727 aa23.99■■□□□ 1.43
COL9A3-213ENST00000489045 MPPE1Q53F39 396 aa23.99■■□□□ 1.43
COL9A3-213ENST00000489045 DENND1BQ6P3S1 775 aa23.99■■□□□ 1.43
COL9A3-213ENST00000489045 SLC2A11Q9BYW1 496 aa23.99■■□□□ 1.43
COL9A3-213ENST00000489045 ST7Q9NRC1 585 aa23.99■■□□□ 1.43
COL9A3-213ENST00000489045 STOML2Q9UJZ1 356 aa23.99■■□□□ 1.43
COL9A3-213ENST00000489045 STON1Q9Y6Q2 735 aa23.99■■□□□ 1.43
COL9A3-213ENST00000489045 ZBTB24O43167 697 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-213ENST00000489045 LETM1O95202 739 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-213ENST00000489045 SLC9A1P19634 815 aa23.98■■□□□ 1.43
COL9A3-213ENST00000489045 HOXD9P28356 352 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-213ENST00000489045 PTGER3P43115 390 aa23.98■■□□□ 1.43
COL9A3-213ENST00000489045 PPM1JQ5JR12 505 aa23.98■■□□□ 1.43
COL9A3-213ENST00000489045 RNF43Q68DV7 783 aa23.98■■□□□ 1.43
COL9A3-213ENST00000489045 ENOSF1Q7L5Y1 443 aa23.98■■□□□ 1.43
COL9A3-213ENST00000489045 UCMAQ8WVF2 138 aa23.98■■□□□ 1.43
COL9A3-213ENST00000489045 PIGKQ92643 395 aa23.98■■□□□ 1.43
COL9A3-213ENST00000489045 EDEM2Q9BV94 578 aa23.98■■□□□ 1.43
COL9A3-213ENST00000489045 SLC6A17Q9H1V8 727 aa23.98■■□□□ 1.43
COL9A3-213ENST00000489045 THAP10Q9P2Z0 257 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-213ENST00000489045 MUC22E2RYF6 1773 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-213ENST00000489045 PI4KAP42356 2102 aa23.98■■□□□ 1.43
COL9A3-213ENST00000489045 GON4LQ3T8J9 2241 aa23.98■■□□□ 1.43
COL9A3-213ENST00000489045 PATE3B3GLJ2 98 aa23.97■■□□□ 1.43
COL9A3-213ENST00000489045 THAP12O43422 761 aa23.97■■□□□ 1.43
COL9A3-213ENST00000489045 MED7O43513 233 aa23.97■■□□□ 1.43
COL9A3-213ENST00000489045 IGLV3-27P01718 113 aa23.97■■□□□ 1.43
COL9A3-213ENST00000489045 GNA15P30679 374 aa23.97■■□□□ 1.43
COL9A3-213ENST00000489045 IL12RB1P42701 662 aa23.97■■□□□ 1.43
COL9A3-213ENST00000489045 MTIF2P46199 727 aaKnown RBP23.97■■□□□ 1.43
COL9A3-213ENST00000489045 RPL34P49207 117 aaKnown RBP23.97■■□□□ 1.43
COL9A3-213ENST00000489045 ZNF445P59923 1031 aa23.97■■□□□ 1.43
COL9A3-213ENST00000489045 APBA1Q02410 837 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms