RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 BIN1O00499 593 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 NPC1O15118 1278 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 GNA14O95837 355 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 LCP1P13796 627 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 NDUFV2P19404 249 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 MFAP3P55082 362 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 RPL6Q02878 288 aaKnown RBP23.63■■□□□ 1.37
PTPN4-211ENST00000488279 CNGA2Q16280 664 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 PKDCCQ504Y2 493 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 LYSMD4Q5XG99 296 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 SLC35F5Q8WV83 523 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 TFAP2BQ92481 460 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 EDEM1Q92611 657 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 ERLEC1Q96DZ1 483 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 CNTNAP3BQ96NU0 1288 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 CNTNAP3Q9BZ76 1288 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 CD248Q9HCU0 757 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 TMEM9BQ9NQ34 198 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 EVLQ9UI08 416 aaPredicted RBP23.63■■□□□ 1.37
PTPN4-211ENST00000488279 CTNND2Q9UQB3 1225 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 HBS1LQ9Y450 684 aaKnown RBP23.63■■□□□ 1.37
PTPN4-211ENST00000488279 RAD54BQ9Y620 910 aa23.63■■□□□ 1.37
PTPN4-211ENST00000488279 THADAQ6YHU6 1953 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 WASH3PC4AMC7 463 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 RNF225M0QZC1 329 aaPredicted RBP23.62■■□□□ 1.37
PTPN4-211ENST00000488279 GADD45BO75293 160 aaPredicted RBP23.62■■□□□ 1.37
PTPN4-211ENST00000488279 LMAN2Q12907 356 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 E2F5Q15329 346 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 STILQ15468 1287 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 TRIM61Q5EBN2 209 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 SCML4Q8N228 414 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 EHBP1Q8NDI1 1231 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 LMO3Q8TAP4 145 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 UCMAQ8WVF2 138 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 NUSAP1Q9BXS6 441 aaKnown RBP23.62■■□□□ 1.37
PTPN4-211ENST00000488279 SLC2A11Q9BYW1 496 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 TMEM74BQ9NUR3 256 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 SFMBT1Q9UHJ3 866 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 STON1Q9Y6Q2 735 aa23.62■■□□□ 1.37
PTPN4-211ENST00000488279 KCNK5O95279 499 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 ZNF132P52740 706 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 KCNH2Q12809 1159 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 STARD3Q14849 445 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 GEN1Q17RS7 908 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 MPPE1Q53F39 396 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 N4BP2L1Q5TBK1 243 aaPredicted RBP23.61■■□□□ 1.37
PTPN4-211ENST00000488279 PMF1Q6P1K2 205 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 RRAGAQ7L523 313 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 ANKS1BQ7Z6G8 1248 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 FAM217AQ8IXS0 508 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 KAT5Q92993 513 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 PIWIL1Q96J94 861 aaKnown RBP23.61■■□□□ 1.37
PTPN4-211ENST00000488279 MRGPRX1Q96LB2 322 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 THAP10Q9P2Z0 257 aaPredicted RBP23.61■■□□□ 1.37
PTPN4-211ENST00000488279 PILRBQ9UKJ0 227 aa23.61■■□□□ 1.37
PTPN4-211ENST00000488279 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.61■■□□□ 1.37
PTPN4-211ENST00000488279 IGHV1OR15-9A0A0B4J2B8 117 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 ITPKAP23677 461 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 HOXD12P35452 270 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 RGS7P49802 495 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 STX17P56962 302 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 DAOAP59103 153 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 GCNT1Q02742 428 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 PAK1Q13153 545 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 TRIM59Q8IWR1 403 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 DEFB119Q8N690 84 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 IRGQQ8WZA9 623 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 SRRTQ9BXP5 876 aaKnown RBP23.6■■□□□ 1.37
PTPN4-211ENST00000488279 ELOVL2Q9NXB9 296 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 CYP8B1Q9UNU6 501 aa23.6■■□□□ 1.37
PTPN4-211ENST00000488279 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.6■■□□□ 1.37
PTPN4-211ENST00000488279 M0QYV0 167 aa23.59■■□□□ 1.37
PTPN4-211ENST00000488279 CDX4O14627 284 aaPredicted RBP23.59■■□□□ 1.37
PTPN4-211ENST00000488279 TIMM44O43615 452 aa23.59■■□□□ 1.37
PTPN4-211ENST00000488279 FGFR1OPO95684 399 aaKnown RBP23.59■■□□□ 1.37
PTPN4-211ENST00000488279 AFPP02771 609 aaKnown RBP23.59■■□□□ 1.37
PTPN4-211ENST00000488279 ZNF445P59923 1031 aa23.59■■□□□ 1.37
PTPN4-211ENST00000488279 ZNF33AQ06730 810 aa23.59■■□□□ 1.37
PTPN4-211ENST00000488279 RBBP8NLQ8NC74 664 aaPredicted RBP23.59■■□□□ 1.37
PTPN4-211ENST00000488279 CEP76Q8TAP6 659 aa23.59■■□□□ 1.37
PTPN4-211ENST00000488279 HSFY1Q96LI6 401 aa23.59■■□□□ 1.37
PTPN4-211ENST00000488279 ZSWIM1Q9BR11 485 aa23.59■■□□□ 1.37
PTPN4-211ENST00000488279 CLEC4EQ9ULY5 219 aa23.59■■□□□ 1.37
PTPN4-211ENST00000488279 CNOT1A5YKK6 2376 aaKnown RBP23.59■■□□□ 1.37
PTPN4-211ENST00000488279 PIK3R2O00459 728 aa23.58■■□□□ 1.37
PTPN4-211ENST00000488279 SYNCRIPO60506 623 aaKnown RBP23.58■■□□□ 1.37
PTPN4-211ENST00000488279 LATS1O95835 1130 aa23.58■■□□□ 1.37
PTPN4-211ENST00000488279 BRD2P25440 801 aaKnown RBP23.58■■□□□ 1.37
PTPN4-211ENST00000488279 MARSP56192 900 aaKnown RBP23.58■■□□□ 1.37
PTPN4-211ENST00000488279 EIF4HQ15056 248 aaKnown RBP23.58■■□□□ 1.37
PTPN4-211ENST00000488279 ADGRF1Q5T601 910 aa23.58■■□□□ 1.37
PTPN4-211ENST00000488279 PSAPL1Q6NUJ1 521 aa23.58■■□□□ 1.37
PTPN4-211ENST00000488279 SLC23A3Q6PIS1 610 aa23.58■■□□□ 1.37
PTPN4-211ENST00000488279 KIAA1324Q6UXG2 1013 aaKnown RBP23.58■■□□□ 1.37
PTPN4-211ENST00000488279 ARHGEF19Q8IW93 802 aa23.58■■□□□ 1.37
PTPN4-211ENST00000488279 GOLGA1Q92805 767 aa23.58■■□□□ 1.37
PTPN4-211ENST00000488279 TMA16Q96EY4 203 aaKnown RBP23.58■■□□□ 1.37
PTPN4-211ENST00000488279 CIPCQ9C0C6 399 aa23.58■■□□□ 1.37
PTPN4-211ENST00000488279 SLC6A17Q9H1V8 727 aa23.58■■□□□ 1.37
PTPN4-211ENST00000488279 STOML2Q9UJZ1 356 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms