RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 DDX60LQ5H9U9 1706 aaKnown RBP13.64□□□□□ -0.23
HMGN1-216ENST00000486741 FAM155BO75949 473 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 PIGRP01833 764 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 ERVK-10P10266 1014 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 FLT3LGP49771 235 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 TARBP2Q15633 366 aaKnown RBP13.64□□□□□ -0.23
HMGN1-216ENST00000486741 STRA8Q7Z7C7 330 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 UNC93AQ86WB7 457 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 CYP4X1Q8N118 509 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 GSDMBQ8TAX9 411 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 GPR152Q8TDT2 470 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 THTPAQ9BU02 230 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 POPDC2Q9HBU9 364 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 SIX4Q9UIU6 781 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 TRPV2Q9Y5S1 764 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 SCN7AQ01118 1682 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 ATG7O95352 703 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 CBX6O95503 412 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 FDFT1P37268 417 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 ACAP1Q15027 740 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 RBBP5Q15291 538 aaKnown RBP13.63□□□□□ -0.23
HMGN1-216ENST00000486741 LRRC36Q1X8D7 754 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 CTXN3Q4LDR2 81 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 FNBP1LQ5T0N5 605 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 EP400NLQ6ZTU2 488 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 TTC8Q8TAM2 541 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 SRPK1Q96SB4 655 aaKnown RBP13.63□□□□□ -0.23
HMGN1-216ENST00000486741 NMRK2Q9NPI5 230 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 FAM8A1Q9UBU6 413 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 COL22A1Q8NFW1 1626 aaPredicted RBP13.63□□□□□ -0.23
HMGN1-216ENST00000486741 EDN1P05305 212 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 MMP13P45452 471 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 ARHGEF6Q15052 776 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 CA9Q16790 459 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 DCP1BQ8IZD4 617 aaKnown RBP13.63□□□□□ -0.23
HMGN1-216ENST00000486741 NPLOC4Q8TAT6 608 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 ZNF75CPQ92670 426 aaPredicted RBP13.63□□□□□ -0.23
HMGN1-216ENST00000486741 TUBB6Q9BUF5 446 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 PPCSQ9HAB8 311 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 ARMCX1Q9P291 453 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 SNX3O60493 162 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 GPD2P43304 727 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 GAD2Q05329 585 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 EML3Q32P44 896 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 DEFB128Q7Z7B8 93 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 PPHLN1Q8NEY8 458 aaKnown RBP13.63□□□□□ -0.23
HMGN1-216ENST00000486741 CPT1BQ92523 772 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 WNT8BQ93098 351 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 FBXO32Q969P5 355 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 ZBED2Q9BTP6 218 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 FAM105AQ9NUU6 356 aa13.63□□□□□ -0.23
HMGN1-216ENST00000486741 PAPSS1O43252 624 aaPredicted RBP13.62□□□□□ -0.23
HMGN1-216ENST00000486741 AXLP30530 894 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 SLC39A12Q504Y0 691 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 ANKRD20A2Q5SQ80 823 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 SH2D4BQ5SQS7 431 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 ANKRD20A1Q5TYW2 823 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 RAB44Q7Z6P3 723 aaPredicted RBP13.62□□□□□ -0.23
HMGN1-216ENST00000486741 OR52K1Q8NGK4 314 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 RBM22Q9NW64 420 aaKnown RBP eCLIP13.62□□□□□ -0.233e-6■■□□□ 13.5
HMGN1-216ENST00000486741 OR12D3Q9UGF7 316 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 MID2Q9UJV3 735 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 PCDHGC3Q9UN70 934 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 LTBP3Q9NS15 1303 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 DOCK2Q92608 1830 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 SMCHD1A6NHR9 2005 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 BCORQ6W2J9 1755 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 DGKIO75912 1065 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 F9P00740 461 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 CUL3Q13618 768 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 PLD5Q8N7P1 536 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 CKAP2Q8WWK9 683 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 PPWD1Q96BP3 646 aaKnown RBP13.62□□□□□ -0.23
HMGN1-216ENST00000486741 CATSPERBQ9H7T0 1116 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 STARD7Q9NQZ5 370 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 CHST12Q9NRB3 414 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 OPHN1O60890 802 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 NOS2P35228 1153 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 SERPINB4P48594 390 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 AQP5P55064 265 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 MRPS6P82932 125 aaKnown RBP13.62□□□□□ -0.23
HMGN1-216ENST00000486741 ITIH4Q14624 930 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 SLC45A4Q5BKX6 768 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 NAPEPLDQ6IQ20 393 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 PRPF39Q86UA1 669 aaKnown RBP13.62□□□□□ -0.23
HMGN1-216ENST00000486741 HERPUD2Q9BSE4 406 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 VANGL2Q9ULK5 521 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 KCNH4Q9UQ05 1017 aa13.62□□□□□ -0.23
HMGN1-216ENST00000486741 TCRBV9S1A1TA0A576 114 aa13.61□□□□□ -0.23
HMGN1-216ENST00000486741 ALOX15BO15296 676 aa13.61□□□□□ -0.23
HMGN1-216ENST00000486741 OR4Q2P0C623 313 aa13.61□□□□□ -0.23
HMGN1-216ENST00000486741 PAPOLAP51003 745 aaKnown RBP13.61□□□□□ -0.23
HMGN1-216ENST00000486741 CRYBB1P53674 252 aaPredicted RBP13.61□□□□□ -0.23
HMGN1-216ENST00000486741 GRAMD1BQ3KR37 738 aa13.61□□□□□ -0.23
HMGN1-216ENST00000486741 ZNF618Q5T7W0 954 aa13.61□□□□□ -0.23
HMGN1-216ENST00000486741 FAM171A1Q5VUB5 890 aa13.61□□□□□ -0.23
HMGN1-216ENST00000486741 SCARA3Q6AZY7 606 aa13.61□□□□□ -0.23
HMGN1-216ENST00000486741 ZDHHC17Q8IUH5 632 aa13.61□□□□□ -0.23
HMGN1-216ENST00000486741 BLOC1S5Q8TDH9 187 aa13.61□□□□□ -0.23
HMGN1-216ENST00000486741 KCNK16Q96T55 309 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms