RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PCSK5Q92824 1860 aa6.86□□□□□ -1.31
USP40-213ENST00000483216 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.86□□□□□ -1.31
USP40-213ENST00000483216 NPC1O15118 1278 aa6.86□□□□□ -1.31
USP40-213ENST00000483216 MPGP29372 298 aa6.86□□□□□ -1.31
USP40-213ENST00000483216 SLC14A1Q13336 389 aa6.86□□□□□ -1.31
USP40-213ENST00000483216 SPARCL1Q14515 664 aa6.86□□□□□ -1.31
USP40-213ENST00000483216 ACSM6Q6P461 480 aa6.86□□□□□ -1.31
USP40-213ENST00000483216 NEK8Q86SG6 692 aa6.86□□□□□ -1.31
USP40-213ENST00000483216 OR52L2PQ8NGH6 319 aa6.86□□□□□ -1.31
USP40-213ENST00000483216 PRPF18Q99633 342 aaKnown RBP6.86□□□□□ -1.31
USP40-213ENST00000483216 EFHD1Q9BUP0 239 aa6.86□□□□□ -1.31
USP40-213ENST00000483216 DAAM1Q9Y4D1 1078 aa6.86□□□□□ -1.31
USP40-213ENST00000483216 CCDC187A0A096LP49 1063 aa6.85□□□□□ -1.31
USP40-213ENST00000483216 RNF8O76064 485 aa6.85□□□□□ -1.31
USP40-213ENST00000483216 ITGA5P08648 1049 aa6.85□□□□□ -1.31
USP40-213ENST00000483216 ALDH18A1P54886 795 aaKnown RBP6.85□□□□□ -1.31
USP40-213ENST00000483216 PTK2BQ14289 1009 aa6.85□□□□□ -1.31
USP40-213ENST00000483216 P3H1Q32P28 736 aa6.85□□□□□ -1.31
USP40-213ENST00000483216 CC2D1BQ5T0F9 858 aaKnown RBP6.85□□□□□ -1.31
USP40-213ENST00000483216 MEX3CQ5U5Q3 659 aaKnown RBP6.85□□□□□ -1.31
USP40-213ENST00000483216 C1orf228Q6PIY5 440 aa6.85□□□□□ -1.31
USP40-213ENST00000483216 FAM71BQ8TC56 605 aa6.85□□□□□ -1.31
USP40-213ENST00000483216 GLMPQ8WWB7 406 aa6.85□□□□□ -1.31
USP40-213ENST00000483216 QTRT1Q9BXR0 403 aaKnown RBP6.85□□□□□ -1.31
USP40-213ENST00000483216 EPS8L2Q9H6S3 715 aa6.85□□□□□ -1.31
USP40-213ENST00000483216 TAGLN3Q9UI15 199 aa6.85□□□□□ -1.31
USP40-213ENST00000483216 VPS4AQ9UN37 437 aa6.85□□□□□ -1.31
USP40-213ENST00000483216 SCAF8Q9UPN6 1271 aaKnown RBP6.85□□□□□ -1.31
USP40-213ENST00000483216 PRR35P0CG20 571 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 KELP23276 732 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 SSBP2P81877 361 aaPredicted RBP6.84□□□□□ -1.31
USP40-213ENST00000483216 GRM4Q14833 912 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 DAZAP2Q15038 168 aaPredicted RBP6.84□□□□□ -1.31
USP40-213ENST00000483216 SEC23BQ15437 767 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 EZH2Q15910 746 aaKnown RBP6.84□□□□□ -1.31
USP40-213ENST00000483216 CNGA3Q16281 694 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 PFKFB3Q16875 520 aaPredicted RBP6.84□□□□□ -1.31
USP40-213ENST00000483216 SLC18B1Q6NT16 456 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 MIS18BP1Q6P0N0 1132 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 KRT27Q7Z3Y8 459 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 YTHDF3Q7Z739 585 aaKnown RBP6.84□□□□□ -1.31
USP40-213ENST00000483216 GATAD2AQ86YP4 633 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 C16orf71Q8IYS4 520 aaPredicted RBP6.84□□□□□ -1.31
USP40-213ENST00000483216 NRSN1Q8IZ57 195 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.84□□□□□ -1.31
USP40-213ENST00000483216 PMM1Q92871 262 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 SH2D3AQ9BRG2 576 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 CRB3Q9BUF7 120 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 NUAK2Q9H093 628 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 TP63Q9H3D4 680 aaPredicted RBP6.84□□□□□ -1.31
USP40-213ENST00000483216 KCNK9Q9NPC2 374 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 PDGFCQ9NRA1 345 aa6.84□□□□□ -1.31
USP40-213ENST00000483216 UBE2J1Q9Y385 318 aaPredicted RBP6.84□□□□□ -1.31
USP40-213ENST00000483216 CYP2D7A0A087X1C5 515 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.83□□□□□ -1.32
USP40-213ENST00000483216 SMIM35A0A1B0GVV1 85 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 AQP12BA6NM10 295 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 TTC34A8MYJ7 566 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 M0QZQ0 153 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 SKAP2O75563 359 aaPredicted RBP6.83□□□□□ -1.32
USP40-213ENST00000483216 ALADP13716 330 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 OS9Q13438 667 aaPredicted RBP6.83□□□□□ -1.32
USP40-213ENST00000483216 ZNF268Q14587 947 aaPredicted RBP6.83□□□□□ -1.32
USP40-213ENST00000483216 PUM3Q15397 648 aaKnown RBP6.83□□□□□ -1.32
USP40-213ENST00000483216 ELF2Q15723 593 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 SRSF7Q16629 238 aaKnown RBP eCLIP6.83□□□□□ -1.32
USP40-213ENST00000483216 PFKFB4Q16877 469 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 MYLK4Q86YV6 388 aaPredicted RBP6.83□□□□□ -1.32
USP40-213ENST00000483216 OSR1Q8TAX0 266 aaPredicted RBP6.83□□□□□ -1.32
USP40-213ENST00000483216 WDR60Q8WVS4 1066 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 AKAP1Q92667 903 aaKnown RBP eCLIP6.83□□□□□ -1.32
USP40-213ENST00000483216 RSC1A1Q92681 617 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 MAP4K1Q92918 833 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 EID2BQ96D98 161 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 P2RY11Q96G91 374 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 FAM118BQ9BPY3 351 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 CDCP1Q9H5V8 836 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 OBP2BQ9NPH6 170 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 FBXO28Q9NVF7 368 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 NFU1Q9UMS0 254 aa6.83□□□□□ -1.32
USP40-213ENST00000483216 SIRT4Q9Y6E7 314 aaPredicted RBP6.83□□□□□ -1.32
USP40-213ENST00000483216 CECR2Q9BXF3 1484 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 LGALS16A8MUM7 142 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 DSCR3O14972 297 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 ASNA1O43681 348 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 ABCG1P45844 678 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 ICA1Q05084 483 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 CBFBQ13951 182 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 SUPT20HL1Q3ZLR7 823 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 ZACNQ401N2 412 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 RINT1Q6NUQ1 792 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 TRABD2AQ86V40 505 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 SLC22A17Q8WUG5 538 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 STYXQ8WUJ0 223 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 NRIP3Q9NQ35 241 aa6.82□□□□□ -1.32
USP40-213ENST00000483216 ZNF804BA4D1E1 1349 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 C16orf96A6NNT2 1141 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 F5H423 210 aaPredicted RBP6.81□□□□□ -1.32
USP40-213ENST00000483216 SYT5O00445 386 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 FCHO1O14526 889 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms