RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 KRT1P04264 644 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 SPATA31D3P0C874 917 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 PYGMP11217 842 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 EPCAMP16422 314 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 IL1R2P27930 398 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 GABRR2P28476 465 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 L1CAMP32004 1257 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 ARL4AP40617 200 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 NRIP1P48552 1158 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 ARSEP51690 589 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 CDR1P51861 262 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 TBX4P57082 545 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 SLC7A9P82251 487 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 NME3Q13232 169 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 KRT81Q14533 505 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 SH3PXD2AQ5TCZ1 1133 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 PRPF38BQ5VTL8 546 aaKnown RBP10.55□□□□□ -0.72
USP39-215ENST00000481409 SPATA31D4Q6ZUB0 917 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 CYP4V2Q6ZWL3 525 aaPredicted RBP10.55□□□□□ -0.72
USP39-215ENST00000481409 PDZD4Q76G19 769 aaPredicted RBP10.55□□□□□ -0.72
USP39-215ENST00000481409 BZW1Q7L1Q6 419 aaKnown RBP10.55□□□□□ -0.72
USP39-215ENST00000481409 RNF34Q969K3 372 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 FAF2Q96CS3 445 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 BTN2A3PQ96KV6 586 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 EPAS1Q99814 870 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 DDX50Q9BQ39 737 aaKnown RBP10.55□□□□□ -0.72
USP39-215ENST00000481409 SNRNP25Q9BV90 132 aaKnown RBP10.55□□□□□ -0.72
USP39-215ENST00000481409 MAK16Q9BXY0 300 aaKnown RBP10.55□□□□□ -0.72
USP39-215ENST00000481409 DCLK3Q9C098 648 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 CERS4Q9HA82 394 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 PCSK1NQ9UHG2 260 aa10.55□□□□□ -0.72
USP39-215ENST00000481409 FEZ2Q9UHY8 353 aaPredicted RBP10.55□□□□□ -0.72
USP39-215ENST00000481409 ATG2AQ2TAZ0 1938 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 ANAPC1Q9H1A4 1944 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 TRAV19A0A0A6YYK7 116 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 CCDC195A0A1B0GUA6 201 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 CTAGE15A4D2H0 777 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 EPOPA6NHQ4 379 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 C3orf70A6NLC5 250 aaPredicted RBP10.54□□□□□ -0.72
USP39-215ENST00000481409 H3BRJ5 948 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 CEP290O15078 2479 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 CCL16O15467 120 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 COCHO43405 550 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 OBSL1O75147 1896 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 TADA3O75528 432 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 SLU7O95391 586 aaKnown RBP10.54□□□□□ -0.72
USP39-215ENST00000481409 FGGP02679 453 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 CTAGE8P0CG41 777 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 TCF3P15923 654 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 TFE3P19532 575 aaPredicted RBP10.54□□□□□ -0.72
USP39-215ENST00000481409 CXCR5P32302 372 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 CDKN2BP42772 138 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 HARS2P49590 506 aaKnown RBP10.54□□□□□ -0.72
USP39-215ENST00000481409 CDH6P55285 790 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 EFEMP1Q12805 493 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 LONRF2Q1L5Z9 754 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 DCAF12L1Q5VU92 463 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 SPOCD1Q6ZMY3 1216 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 ADGRD2Q7Z7M1 963 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 TMEM150AQ86TG1 271 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 CTAGE6Q86UF2 777 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 FAM131BQ86XD5 332 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 SLC13A5Q86YT5 568 aaPredicted RBP10.54□□□□□ -0.72
USP39-215ENST00000481409 CCDC50Q8IVM0 306 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 CTAGE4Q8IX94 777 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 VN1R2Q8NFZ6 395 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 COG1Q8WTW3 980 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 FCRL2Q96LA5 508 aaPredicted RBP10.54□□□□□ -0.72
USP39-215ENST00000481409 PEBP4Q96S96 227 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 CORO1BQ9BR76 489 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 OSBPL8Q9BZF1 889 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 TKTL2Q9H0I9 626 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 ZNF334Q9HCZ1 680 aaPredicted RBP10.54□□□□□ -0.72
USP39-215ENST00000481409 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.54□□□□□ -0.72
USP39-215ENST00000481409 SFMBT1Q9UHJ3 866 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 RASAL2Q9UJF2 1139 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 RAD54BQ9Y620 910 aa10.54□□□□□ -0.72
USP39-215ENST00000481409 hCG_1818297A0A087WSY0 165 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 SLC12A8A0AV02 714 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 EFCAB8A8MWE9 144 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 PER2O15055 1255 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 FGF10O15520 208 aaPredicted RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 SRGAP2O75044 1071 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 RHOP08100 348 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 HDCP19113 662 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 TGM2P21980 687 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 MARCKSL1P49006 195 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 NR2C2P49116 596 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 SLC11A2P49281 568 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 MLLT6P55198 1093 aaPredicted RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 PITX1P78337 314 aaPredicted RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 LMNB2Q03252 620 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 SEMA3BQ13214 749 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 KLF1Q13351 362 aaPredicted RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 ADAM15Q13444 863 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 DPYSL3Q14195 570 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 GLE1Q53GS7 698 aaKnown RBP10.53□□□□□ -0.72
USP39-215ENST00000481409 ZNF697Q5TEC3 545 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 CCDC70Q6NSX1 233 aa10.53□□□□□ -0.72
USP39-215ENST00000481409 DRICH1Q6PGQ1 229 aaPredicted RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms