RNA–Protein interactions for RNA: ENST00000475482.5

CPSF3-203, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 4

Gene CPSF3, Length 871 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-203ENST00000475482 EIF2DP41214 584 aaKnown RBP16.37■□□□□ 0.21
CPSF3-203ENST00000475482 MAGEA1P43355 309 aa16.37■□□□□ 0.21
CPSF3-203ENST00000475482 ZNF394Q53GI3 561 aa16.37■□□□□ 0.21
CPSF3-203ENST00000475482 DNTTIP2Q5QJE6 756 aaKnown RBP16.37■□□□□ 0.21
CPSF3-203ENST00000475482 LONP2Q86WA8 852 aa16.37■□□□□ 0.21
CPSF3-203ENST00000475482 REXO1L1PQ8IX06 675 aa16.37■□□□□ 0.21
CPSF3-203ENST00000475482 ACRBPQ8NEB7 543 aa16.37■□□□□ 0.21
CPSF3-203ENST00000475482 TTC16Q8NEE8 873 aa16.37■□□□□ 0.21
CPSF3-203ENST00000475482 HEXIM2Q96MH2 286 aaKnown RBP16.37■□□□□ 0.21
CPSF3-203ENST00000475482 KLF16Q9BXK1 252 aaPredicted RBP16.37■□□□□ 0.21
CPSF3-203ENST00000475482 NMUR1Q9HB89 426 aa16.37■□□□□ 0.21
CPSF3-203ENST00000475482 SMG5Q9UPR3 1016 aaKnown RBP16.37■□□□□ 0.21
CPSF3-203ENST00000475482 PCDHA13Q9Y5I0 950 aa16.37■□□□□ 0.21
CPSF3-203ENST00000475482 HRO43593 1189 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 KIF5CO60282 957 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 PNMA6AP0CW24 399 aaPredicted RBP16.36■□□□□ 0.21
CPSF3-203ENST00000475482 CYP11B1P15538 503 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 ACO1P21399 889 aaKnown RBP16.36■□□□□ 0.21
CPSF3-203ENST00000475482 CLCN1P35523 988 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 FNTBP49356 437 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 CDR2Q01850 454 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 GFPT1Q06210 699 aaPredicted RBP16.36■□□□□ 0.21
CPSF3-203ENST00000475482 RAB41Q5JT25 222 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 ALKBH5Q6P6C2 394 aaKnown RBP16.36■□□□□ 0.21
CPSF3-203ENST00000475482 TMEM270Q6UE05 265 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 HTR3DQ70Z44 454 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 SCD5Q86SK9 330 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 WDR5BQ86VZ2 330 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 DCLK2Q8N568 766 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 ANKRD52Q8NB46 1076 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 RBBP8NLQ8NC74 664 aaPredicted RBP16.36■□□□□ 0.21
CPSF3-203ENST00000475482 EPS8L1Q8TE68 723 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 WBP2Q969T9 261 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 SEPT11Q9NVA2 429 aaKnown RBP16.36■□□□□ 0.21
CPSF3-203ENST00000475482 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.36■□□□□ 0.21
CPSF3-203ENST00000475482 MYO1AQ9UBC5 1043 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 NAGPAQ9UK23 515 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 INTUQ9ULD6 942 aa16.36■□□□□ 0.21
CPSF3-203ENST00000475482 A0A087X0T9 212 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 USP27XA6NNY8 438 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 K7EQS6 105 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 TBX18O95935 607 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 FAM228BP0C875 321 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 TGM1P22735 817 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 PSEN1P49768 467 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 CCDC122Q5T0U0 273 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 TRIM72Q6ZMU5 477 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 SYT13Q7L8C5 426 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 C16orf45Q96MC5 204 aaPredicted RBP16.35■□□□□ 0.21
CPSF3-203ENST00000475482 PDCL3Q9H2J4 239 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 LZTFL1Q9NQ48 299 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 RALGAPA1Q6GYQ0 2036 aa16.35■□□□□ 0.21
CPSF3-203ENST00000475482 CACNA1AO00555 2505 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 A0A1W2PQH9 124 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 SCAMP3O14828 347 aaKnown RBP16.34■□□□□ 0.21
CPSF3-203ENST00000475482 MED7O43513 233 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 ADH1CP00326 375 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 PAEPP09466 180 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 GZMAP12544 262 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 GNA15P30679 374 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 ATP5C1P36542 298 aaKnown RBP16.34■□□□□ 0.21
CPSF3-203ENST00000475482 MESP2Q0VG99 397 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 NYAP1Q6ZVC0 841 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 PIGZQ86VD9 579 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 SLC47A2Q86VL8 602 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 C12orf40Q86WS4 652 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 TTC30AQ86WT1 665 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 BBS7Q8IWZ6 715 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 ETFBKMTQ8IXQ9 262 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 PHTF2Q8N3S3 785 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 CAMKK1Q8N5S9 505 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 CCDC26Q8TAB7 109 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 SLC30A5Q8TAD4 765 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 USP33Q8TEY7 942 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 SYT11Q9BT88 431 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 CLIC5Q9NZA1 410 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 NOCTQ9UK39 431 aaKnown RBP16.34■□□□□ 0.21
CPSF3-203ENST00000475482 KIAA1257Q9ULG3 409 aa16.34■□□□□ 0.21
CPSF3-203ENST00000475482 REXO2Q9Y3B8 237 aaKnown RBP16.34■□□□□ 0.21
CPSF3-203ENST00000475482 DDX3XO00571 662 aaKnown RBP eCLIP16.33■□□□□ 0.22e-7■□□□□ 9.6
CPSF3-203ENST00000475482 PJA2O43164 708 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 HOXC11O43248 304 aaPredicted RBP16.33■□□□□ 0.2
CPSF3-203ENST00000475482 H2AFZP0C0S5 128 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 ADH5P11766 374 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 RARGP13631 454 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 TNNT1P13805 278 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 SLC6A11P48066 632 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 ZNF132P52740 706 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 IFI16Q16666 785 aaKnown RBP16.33■□□□□ 0.2
CPSF3-203ENST00000475482 PKDCCQ504Y2 493 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 LY6G5CQ5SRR4 150 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 PM20D1Q6GTS8 502 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 H2AFVQ71UI9 128 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 NOP9Q86U38 636 aaKnown RBP16.33■□□□□ 0.2
CPSF3-203ENST00000475482 RPLP0P6Q8NHW5 317 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 CALR3Q96L12 384 aaKnown RBP16.33■□□□□ 0.2
CPSF3-203ENST00000475482 POLR3BQ9NW08 1133 aaPredicted RBP16.33■□□□□ 0.2
CPSF3-203ENST00000475482 SH3BP1Q9Y3L3 701 aa16.33■□□□□ 0.2
CPSF3-203ENST00000475482 ANTXRLA6NF34 631 aa16.32■□□□□ 0.2
CPSF3-203ENST00000475482 O00370 1275 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms