RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SLC16A1P53985 500 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 DRG2P55039 364 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 PARP6Q2NL67 630 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 SNRNP48Q6IEG0 339 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 TBC1D10CQ8IV04 446 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 LRRC17Q8N6Y2 441 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 PNPT1Q8TCS8 783 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 CLK4Q9HAZ1 481 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 TBC1D13Q9NVG8 400 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 TRPM5Q9NZQ8 1165 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 PRPF19Q9UMS4 504 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 FAM92AA1XBS5 289 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 FYNP06241 537 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 ABHD2P08910 425 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 ADSSP30520 456 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 ITGADQ13349 1161 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 ZNF554Q86TJ5 538 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 PLA2G12BQ9BX93 195 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 A0A087X1B8 175 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 CPA3P15088 417 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 TNK2Q07912 1038 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 PPLO60437 1756 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 LOC100653049A0A140TA62 436 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 SFI1A8K8P3 1242 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 CCDC166P0CW27 439 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 MGAT5Q09328 741 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 OLFML1Q6UWY5 402 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 ZNF438Q7Z4V0 828 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 CCDC185Q8N715 623 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 DSEQ9UL01 958 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 C2CD2Q9Y426 696 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 ACADLP28330 430 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 DYNLL1P63167 89 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 SLC25A13Q9UJS0 675 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 TNPO3Q9Y5L0 923 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 HACD1B0YJ81 288 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 DNAJA2O60884 412 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 CEBPAP49715 358 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 CSE1LP55060 971 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 POLD3Q15054 466 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 QPRTQ15274 297 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 FAM71DQ8N9W8 422 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 ZKSCAN4Q969J2 545 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 SIK2Q9H0K1 926 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 AFF4Q9UHB7 1163 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 MAPTP10636 758 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 ALOX12P18054 663 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 FMR1Q06787 632 aaKnown RBP eCLIP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 NFIL3Q16649 462 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 MFSD4BQ5TF39 518 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 SLC25A24Q6NUK1 477 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 TAF8Q7Z7C8 310 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 CLVS1Q8IUQ0 354 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 LEMD2Q8NC56 503 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 BLOC1S5Q8TDH9 187 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 EPS8L3Q8TE67 593 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 SPATA5L1Q9BVQ7 753 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 CDH9Q9ULB4 789 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 FAM47E-STBD1D6RA91 191 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 PRKG1Q13976 671 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 MYO1HQ8N1T3 1032 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 RIN2Q8WYP3 895 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 REEP2Q9BRK0 252 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 IL1RL2Q9HB29 575 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 WBP11Q9Y2W2 641 aaKnown RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 KNL1Q8NG31 2342 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 TRIP11Q15643 1979 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 A0A1W2PRG6 482 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 MATN2O00339 956 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 TFE3P19532 575 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 GRK4P32298 578 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 TUBA3EQ6PEY2 450 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 SLITRK1Q96PX8 696 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 SPAG4Q9NPE6 437 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 VANGL2Q9ULK5 521 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 PCDHGC5Q9Y5F6 944 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 CARNS1A5YM72 827 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 H3BQF6 201 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 CDC40O60508 579 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 VAC14Q08AM6 782 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 ST3GAL1Q11201 340 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 TRIM28Q13263 835 aaKnown RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 FAM187BQ17R55 369 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 CYB5R4Q7L1T6 521 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 CPA5Q8WXQ8 436 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 PROX1Q92786 737 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 SPON2Q9BUD6 331 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 CLPBQ9H078 707 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 NMRAL1Q9HBL8 299 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 SUPT7LO94864 414 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 KLRC1P26715 233 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 ZNF57Q68EA5 555 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 PSMG1O95456 288 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 CYP1A1P04798 512 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 ADSLP30566 484 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 MPP3Q13368 585 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 EPHX4Q8IUS5 362 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 PSMA8Q8TAA3 256 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms