RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 PCNX2A6NKB5 2137 aa18.32■□□□□ 0.52
COL7A1-208ENST00000470076 SLC12A8A0AV02 714 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 SERPINF2P08697 491 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 MAPK8P45983 427 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 GFPT1Q06210 699 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-208ENST00000470076 PDE4CQ08493 712 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 BST2Q10589 180 aaKnown RBP18.31■□□□□ 0.52
COL7A1-208ENST00000470076 DEFB119Q8N690 84 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 ENGASEQ8NFI3 743 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 SMARCE1Q969G3 411 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 SLC2A11Q9BYW1 496 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 ULBP1Q9BZM6 244 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 LRRC4Q9HBW1 653 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 HOOK1Q9UJC3 728 aaKnown RBP18.31■□□□□ 0.52
COL7A1-208ENST00000470076 KIAA1257Q9ULG3 409 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 CACNA1EQ15878 2313 aa18.31■□□□□ 0.52
COL7A1-208ENST00000470076 ADAMTS9Q9P2N4 1935 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 WASH3PC4AMC7 463 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 CD19P15391 556 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 TBXAS1P24557 533 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-208ENST00000470076 ATXN3P54252 364 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-208ENST00000470076 PMS1P54277 932 aaKnown RBP18.3■□□□□ 0.52
COL7A1-208ENST00000470076 ENPP2Q13822 863 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 EIF4HQ15056 248 aaKnown RBP18.3■□□□□ 0.52
COL7A1-208ENST00000470076 GEN1Q17RS7 908 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 ANKS1BQ7Z6G8 1248 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 METTL3Q86U44 580 aaKnown RBP18.3■□□□□ 0.52
COL7A1-208ENST00000470076 SLC41A1Q8IVJ1 513 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 FAM217AQ8IXS0 508 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 SLC35C1Q96A29 364 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 ERLEC1Q96DZ1 483 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 PIWIL1Q96J94 861 aaKnown RBP18.3■□□□□ 0.52
COL7A1-208ENST00000470076 HSPA12BQ96MM6 686 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 IPO9Q96P70 1041 aaKnown RBP18.3■□□□□ 0.52
COL7A1-208ENST00000470076 SLC32A1Q9H598 525 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 CAPN10Q9HC96 672 aa18.3■□□□□ 0.52
COL7A1-208ENST00000470076 METTL14Q9HCE5 456 aaKnown RBP18.3■□□□□ 0.52
COL7A1-208ENST00000470076 THAP10Q9P2Z0 257 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-208ENST00000470076 TULP2O00295 520 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 NDUFS2O75306 463 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 SETSIPP0DME0 302 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 VDRP11473 427 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 STIM1Q13586 685 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 TRIP4Q15650 581 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-208ENST00000470076 FUT11Q495W5 492 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 KIAA1324Q6UXG2 1013 aaKnown RBP18.29■□□□□ 0.52
COL7A1-208ENST00000470076 BHLHA9Q7RTU4 235 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 TRIML1Q8N9V2 468 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 DEFB124Q8NES8 71 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 DDI1Q8WTU0 396 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 RNF139Q8WU17 664 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 FOXJ1Q92949 421 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 ZNF419Q96HQ0 510 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-208ENST00000470076 TIGD1Q96MW7 591 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 SLC6A17Q9H1V8 727 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 PRDM16Q9HAZ2 1276 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 ELOVL2Q9NXB9 296 aa18.29■□□□□ 0.52
COL7A1-208ENST00000470076 HBS1LQ9Y450 684 aaKnown RBP18.29■□□□□ 0.52
COL7A1-208ENST00000470076 PCDH15Q96QU1 1955 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 CHD6Q8TD26 2715 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 TRIM49BA6NDI0 452 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 UPK3BL1B0FP48 263 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 UPK3BL2E5RIL1 263 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 O00370 1275 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 PSMA7O14818 248 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 IL12RB1P42701 662 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 HARS2P49590 506 aaKnown RBP18.28■□□□□ 0.52
COL7A1-208ENST00000470076 ZNF445P59923 1031 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 ADIGQ0VDE8 80 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 FOXC1Q12948 553 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 SEMA3BQ13214 749 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 MPPE1Q53F39 396 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 SYCP2LQ5T4T6 812 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 FMNL3Q8IVF7 1028 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 SIX6OS1Q8N1H7 587 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 SCML4Q8N228 414 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 HDDC3Q8N4P3 179 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 UBR7Q8N806 425 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 KCTD13Q8WZ19 329 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 NDRG1Q92597 394 aaKnown RBP18.28■□□□□ 0.52
COL7A1-208ENST00000470076 GTPBP2Q9BX10 602 aaKnown RBP18.28■□□□□ 0.52
COL7A1-208ENST00000470076 ABCC13Q9NSE7 274 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 SUSD2Q9UGT4 822 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 CKAP5Q14008 2032 aa18.28■□□□□ 0.52
COL7A1-208ENST00000470076 ARHGAP33O14559 1287 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 PMM2O15305 246 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 TIMM44O43615 452 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 SYNCRIPO60506 623 aaKnown RBP18.27■□□□□ 0.52
COL7A1-208ENST00000470076 SYPP08247 313 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 PAEPP09466 180 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 CD6P30203 668 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 PPP1R2P41236 205 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 FMO5P49326 533 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 NUCB2P80303 420 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 LRMPQ12912 555 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 WDR45BQ5MNZ6 344 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 BSPRYQ5W0U4 402 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 RGL4Q8IZJ4 473 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 UBA3Q8TBC4 463 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 ERCC4Q92889 916 aaPredicted RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms