RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 PITX1P78337 314 aaPredicted RBP15.81■□□□□ 0.12
NPHP4-205ENST00000466897 DEUP1Q05D60 604 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 HTR4Q13639 388 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 HS1BP3Q53T59 392 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 BRMS1LQ5PSV4 323 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 SND1Q7KZF4 910 aaKnown RBP eCLIP15.81■□□□□ 0.12
NPHP4-205ENST00000466897 UNC45BQ8IWX7 931 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 SH3RF2Q8TEC5 729 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 DEPDC1BQ8WUY9 529 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 AZIN2Q96A70 460 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 FCRL2Q96LA5 508 aaPredicted RBP15.81■□□□□ 0.12
NPHP4-205ENST00000466897 ZNF830Q96NB3 372 aaPredicted RBP15.81■□□□□ 0.12
NPHP4-205ENST00000466897 ASB2Q96Q27 587 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 TRIM7Q9C029 511 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 DCLK3Q9C098 648 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 PIGVQ9NUD9 493 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.81■□□□□ 0.12
NPHP4-205ENST00000466897 CALCOCO1Q9P1Z2 691 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 CCL26Q9Y258 94 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 ZNF510Q9Y2H8 683 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 PPP2R2CQ9Y2T4 447 aa15.81■□□□□ 0.12
NPHP4-205ENST00000466897 COL4A2P08572 1712 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 MSI1O43347 362 aaKnown RBP15.8■□□□□ 0.12
NPHP4-205ENST00000466897 KRT86O43790 486 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 GREM1O60565 184 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 RNF8O76064 485 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 TFE3P19532 575 aaPredicted RBP15.8■□□□□ 0.12
NPHP4-205ENST00000466897 CCR1P32246 355 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 PCK1P35558 622 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 AIF1P55008 147 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 HDAC4P56524 1084 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 TBX4P57082 545 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 ZP2Q05996 745 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 FCHO2Q0JRZ9 810 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 IFI16Q16666 785 aaKnown RBP15.8■□□□□ 0.12
NPHP4-205ENST00000466897 C15orf59Q2T9L4 293 aaPredicted RBP15.8■□□□□ 0.12
NPHP4-205ENST00000466897 ACBD5Q5T8D3 534 aaPredicted RBP15.8■□□□□ 0.12
NPHP4-205ENST00000466897 HTR3DQ70Z44 454 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 RNF10Q8N5U6 811 aaKnown RBP15.8■□□□□ 0.12
NPHP4-205ENST00000466897 ADAM32Q8TC27 787 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 BPIFB1Q8TDL5 484 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 FAM172AQ8WUF8 416 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 OTUB2Q96DC9 234 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 SMG9Q9H0W8 520 aaKnown RBP15.8■□□□□ 0.12
NPHP4-205ENST00000466897 SMPD4Q9NXE4 827 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 IGSF9Q9P2J2 1179 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 STOML2Q9UJZ1 356 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 LSM7Q9UK45 103 aaKnown RBP15.8■□□□□ 0.12
NPHP4-205ENST00000466897 DOCK4Q8N1I0 1966 aa15.8■□□□□ 0.12
NPHP4-205ENST00000466897 TCF20Q9UGU0 1960 aaKnown RBP15.8■□□□□ 0.12
NPHP4-205ENST00000466897 MYO10Q9HD67 2058 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 C19orf67A6NJJ6 358 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 HEPACAM2A8MVW5 462 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 KCNU1A8MYU2 1149 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 PROSCO94903 275 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 APOEP02649 317 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 BMP1P13497 986 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 HARS2P49590 506 aaKnown RBP15.79■□□□□ 0.12
NPHP4-205ENST00000466897 ATP11AP98196 1134 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 TANGO2Q6ICL3 276 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 C11orf63Q6NUN7 778 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 PARM1Q6UWI2 310 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 Q6ZNB5 142 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 MFSD6LQ8IWD5 586 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 FAM217AQ8IXS0 508 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 FGF14Q92915 247 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 NTAN1Q96AB6 310 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 RPGRIP1Q96KN7 1286 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 IRX2Q9BZI1 471 aaPredicted RBP15.79■□□□□ 0.12
NPHP4-205ENST00000466897 GKN1Q9NS71 199 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 ARHGEF38Q9NXL2 777 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 CFAP97Q9P2B7 532 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 TBC1D14Q9P2M4 693 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 SALL4Q9UJQ4 1053 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 TFR2Q9UP52 801 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 SH3BP1Q9Y3L3 701 aa15.79■□□□□ 0.12
NPHP4-205ENST00000466897 SLC9A3R1O14745 358 aaPredicted RBP15.78■□□□□ 0.12
NPHP4-205ENST00000466897 ZSCAN12O43309 604 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 LRCH4O75427 683 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 PSMC3P17980 439 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 CORO1AP31146 461 aaKnown RBP15.78■□□□□ 0.12
NPHP4-205ENST00000466897 VIPR2P41587 438 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 SLC1A1P43005 524 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 NOP2P46087 812 aaKnown RBP15.78■□□□□ 0.12
NPHP4-205ENST00000466897 SCAPQ12770 1279 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 NME3Q13232 169 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 CDO1Q16878 200 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 VITQ6UXI7 678 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 TPCN2Q8NHX9 752 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 RIN3Q8TB24 985 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 UBE2Q2Q8WVN8 375 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 RSPRY1Q96DX4 576 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 BTN2A3PQ96KV6 586 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 WDCPQ9H6R7 721 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 KCND1Q9NSA2 647 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 SLC12A6Q9UHW9 1150 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.78■□□□□ 0.12
NPHP4-205ENST00000466897 NUMBLQ9Y6R0 609 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 DUSP10Q9Y6W6 482 aa15.78■□□□□ 0.12
NPHP4-205ENST00000466897 TICRRQ7Z2Z1 1910 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms