RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 IRX4P78413 519 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 GFPT1Q06210 699 aaPredicted RBP18.32■□□□□ 0.52
COL7A1-206ENST00000466591 STILQ15468 1287 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 MPPE1Q53F39 396 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 SYCP2LQ5T4T6 812 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 N4BP2L1Q5TBK1 243 aaPredicted RBP18.32■□□□□ 0.52
COL7A1-206ENST00000466591 BSPRYQ5W0U4 402 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 CEP76Q8TAP6 659 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 NDRG1Q92597 394 aaKnown RBP18.32■□□□□ 0.52
COL7A1-206ENST00000466591 GABRG3Q99928 467 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 MBD1Q9UIS9 605 aaPredicted RBP18.32■□□□□ 0.52
COL7A1-206ENST00000466591 HBS1LQ9Y450 684 aaKnown RBP18.32■□□□□ 0.52
COL7A1-206ENST00000466591 STON1Q9Y6Q2 735 aa18.32■□□□□ 0.52
COL7A1-206ENST00000466591 A0A1W2PQF6 199 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 TYW5A2RUC4 315 aaKnown RBP18.31■□□□□ 0.52
COL7A1-206ENST00000466591 TULP2O00295 520 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 PIK3R2O00459 728 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 TSPAN3O60637 253 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 PAEPP09466 180 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 ACADMP11310 421 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 KRT5P13647 590 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 ITPKAP23677 461 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 RGS7P49802 495 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 MFAP3P55082 362 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 ZNF33AQ06730 810 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 KIAA1211LQ6NV74 962 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 CCDC117Q8IWD4 279 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-206ENST00000466591 ZC3H3Q8IXZ2 948 aaKnown RBP18.31■□□□□ 0.52
COL7A1-206ENST00000466591 SPATA20Q8TB22 786 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 HSPA12BQ96MM6 686 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 SLC32A1Q9H598 525 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 PRDM16Q9HAZ2 1276 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 CNGB3Q9NQW8 809 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 SFMBT1Q9UHJ3 866 aa18.31■□□□□ 0.52
COL7A1-206ENST00000466591 EVLQ9UI08 416 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-206ENST00000466591 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.31■□□□□ 0.52
COL7A1-206ENST00000466591 MEI4A8MW99 385 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 O00370 1275 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 PENKP01210 267 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-206ENST00000466591 GNSP15586 552 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 HOXD12P35452 270 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 STX17P56962 302 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 ZNF445P59923 1031 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 PAK1Q13153 545 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 EIF4HQ15056 248 aaKnown RBP18.3■□□□□ 0.52
COL7A1-206ENST00000466591 DUOXA1Q1HG43 343 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 SH3PXD2AQ5TCZ1 1133 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 FYB2Q5VWT5 728 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 PM20D1Q6GTS8 502 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 SERPINA13PQ6UXR4 307 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 RRAGAQ7L523 313 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 CPXM2Q8N436 756 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 RBBP8NLQ8NC74 664 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-206ENST00000466591 ST7Q9NRC1 585 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 SLC27A6Q9Y2P4 619 aa18.3■□□□□ 0.52
COL7A1-206ENST00000466591 IGHV1OR15-9A0A0B4J2B8 117 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 YJEFN3A6XGL0 299 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 WASH3PC4AMC7 463 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 E7ENQ6 273 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 P4HA2O15460 535 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 CISD3P0C7P0 127 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 ENGP17813 658 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 BRD2P25440 801 aaKnown RBP18.29■□□□□ 0.52
COL7A1-206ENST00000466591 SLC11A2P49281 568 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 ZNF132P52740 706 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 MCCD1P59942 119 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-206ENST00000466591 ZNF252P-AS1Q0IIN9 211 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 GEN1Q17RS7 908 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 WDR45BQ5MNZ6 344 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 LCLAT1Q6UWP7 414 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 CACUL1Q86Y37 369 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 TRIML1Q8N9V2 468 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 KCTD13Q8WZ19 329 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 PRCCQ92733 491 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-206ENST00000466591 FOXJ1Q92949 421 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 TMA16Q96EY4 203 aaKnown RBP18.29■□□□□ 0.52
COL7A1-206ENST00000466591 MRGPRX1Q96LB2 322 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 SLC2A11Q9BYW1 496 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 MIS12Q9H081 205 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 SLC6A17Q9H1V8 727 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 PILRBQ9UKJ0 227 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 SLC6A14Q9UN76 642 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 PLA2G4CQ9UP65 541 aa18.29■□□□□ 0.52
COL7A1-206ENST00000466591 NCOR2Q9Y618 2525 aa18.28■□□□□ 0.52
COL7A1-206ENST00000466591 ABCA7Q8IZY2 2146 aa18.28■□□□□ 0.52
COL7A1-206ENST00000466591 MSI1O43347 362 aaKnown RBP18.28■□□□□ 0.52
COL7A1-206ENST00000466591 TIMM44O43615 452 aa18.28■□□□□ 0.52
COL7A1-206ENST00000466591 AFPP02771 609 aaKnown RBP18.28■□□□□ 0.52
COL7A1-206ENST00000466591 EPHX1P07099 455 aa18.28■□□□□ 0.52
COL7A1-206ENST00000466591 SYPP08247 313 aa18.28■□□□□ 0.52
COL7A1-206ENST00000466591 CHRM1P11229 460 aaPredicted RBP18.28■□□□□ 0.52
COL7A1-206ENST00000466591 CD44P16070 742 aaKnown RBP18.28■□□□□ 0.52
COL7A1-206ENST00000466591 FNDC3BQ53EP0 1204 aaKnown RBP18.28■□□□□ 0.52
COL7A1-206ENST00000466591 UNC45BQ8IWX7 931 aa18.28■□□□□ 0.52
COL7A1-206ENST00000466591 ELOA2Q8IYF1 753 aaPredicted RBP18.28■□□□□ 0.52
COL7A1-206ENST00000466591 FAM149B1Q96BN6 582 aa18.28■□□□□ 0.52
COL7A1-206ENST00000466591 DDX50Q9BQ39 737 aaKnown RBP18.28■□□□□ 0.52
COL7A1-206ENST00000466591 TMEM74BQ9NUR3 256 aa18.28■□□□□ 0.52
COL7A1-206ENST00000466591 ELOVL2Q9NXB9 296 aa18.28■□□□□ 0.52
COL7A1-206ENST00000466591 SUSD2Q9UGT4 822 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms