RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CHN2P52757 468 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 RASGEF1CQ8N431 466 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 VGLL2Q8N8G2 317 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 SNX31Q8N9S9 440 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 DEFB129Q9H1M3 183 aa19.51■□□□□ 0.71
CCDC88B-204ENST00000463837 DCTN2Q13561 401 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 GTF2H3Q13889 308 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 GLB1LQ6UWU2 654 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 ANKS3Q6ZW76 656 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 MAP4K3Q8IVH8 894 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 CHST12Q9NRB3 414 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 ITGB1BP2Q9UKP3 347 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 NR5A2O00482 541 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 LCA5LO95447 670 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 CHRM3P20309 590 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 DGKDQ16760 1214 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 GLMNQ92990 594 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 BDH2Q9BUT1 245 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 SPDYE5A6NIY4 337 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 VPS26AO75436 327 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 SPDYE7PQ495Y7 208 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 EMC1Q8N766 993 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 DNAJC19Q96DA6 116 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 VIRMAQ69YN4 1812 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 FAM86B1E9PN63 330 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 HMBSP08397 361 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 FAM86B2P0C5J1 330 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 MMP14P50281 582 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 DPYSL3Q14195 570 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 SYTL3Q4VX76 610 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 SLC9A9Q8IVB4 645 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 C9orf16Q9BUW7 83 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 KCNMB3Q9NPA1 279 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 IMPAD1Q9NX62 359 aa19.5■□□□□ 0.71
CCDC88B-204ENST00000463837 CYTH3O43739 400 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 TPBGLP0DKB5 382 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 SLC26A2P50443 739 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 XIAPP98170 497 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 TTLL9Q3SXZ7 439 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 SAMD4BQ5PRF9 694 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 PKN3Q6P5Z2 889 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 EXOC3L1Q86VI1 746 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 POU5F2Q8N7G0 328 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 ATP6V0D2Q8N8Y2 350 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 CYP4F12Q9HCS2 524 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 BST2Q10589 180 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 SLC15A2Q16348 729 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 CASP10Q92851 521 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 KCTD14Q9BQ13 255 aaPredicted RBP19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 PXMP2Q9NR77 195 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 COMMD8Q9NX08 183 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 ITGA11Q9UKX5 1188 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 SYNPO2Q9UMS6 1093 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 SCARA3Q6AZY7 606 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 ARCQ7LC44 396 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 ACOT1Q86TX2 421 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.49■□□□□ 0.713e-9■■■■■ 348.1
CCDC88B-204ENST00000463837 ZFYVE19Q96K21 471 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 C2CD2LO14523 706 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 OPLAHO14841 1288 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 DPEP1P16444 411 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 ST8SIA6P61647 398 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 TBC1D13Q9NVG8 400 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 ZC3H4Q9UPT8 1303 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 CASZ1Q86V15 1759 aa19.49■□□□□ 0.71
CCDC88B-204ENST00000463837 CYP3A7-CYP3A51PA0A087WV96 503 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 C2orf81A6NN90 581 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 CYP3A7P24462 503 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 GSTT1P30711 240 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 BLVRAP53004 296 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 NCALDP61601 193 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 CCDC28BQ9BUN5 200 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 PGK2P07205 417 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 CYP2C9P11712 490 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 TKTP29401 623 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 CDH17Q12864 832 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 ATP6AP1LQ52LC2 224 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 AAGABQ6PD74 315 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 TTC30BQ8N4P2 665 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 ALLCQ8N6M5 410 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 HTR3CQ8WXA8 447 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 TRHDEQ9UKU6 1024 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 LIASO43766 372 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 VPS4BO75351 444 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 SHMT1P34896 483 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 ADARP55265 1226 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 IL17AQ16552 155 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 C1orf186Q6ZWK4 172 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 PALB2Q86YC2 1186 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 FAM71AQ8IYT1 594 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 TBC1D19Q8N5T2 526 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 ZSWIM2Q8NEG5 633 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 ZNF483Q8TF39 744 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 PPP1R10Q96QC0 940 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 PRKD2Q9BZL6 878 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 GPAMQ9HCL2 828 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 CFAP99D6REC4 459 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 FSCN2O14926 492 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 SERPINI2O75830 405 aa19.48■□□□□ 0.71
CCDC88B-204ENST00000463837 STAG3L1P0CL83 205 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms