RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 EGFLAMQ63HQ2 1017 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 SDE2Q6IQ49 451 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 C11orf74Q86VG3 221 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 DDI1Q8WTU0 396 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 STK32AQ8WU08 396 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 SHC3Q92529 594 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 P2RY11Q96G91 374 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 TUBGCP2Q9BSJ2 902 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 DUSP15Q9H1R2 295 aaPredicted RBP22.15■■□□□ 1.14
HMGB3-205ENST00000455596 ARRDC1-AS1Q9H2J1 176 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 NDST4Q9H3R1 872 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 BCCIPQ9P287 314 aaKnown RBP eCLIP22.15■■□□□ 1.14
HMGB3-205ENST00000455596 HCN2Q9UL51 889 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 INVSQ9Y283 1065 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 SLC27A6Q9Y2P4 619 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 TCRBV21S2A2A0A5A6 115 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 LATS1O95835 1130 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 HOXB2P14652 356 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 SDHBP21912 280 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 PUM1Q14671 1186 aaKnown RBP eCLIP22.14■■□□□ 1.13
HMGB3-205ENST00000455596 HSP90AA4PQ58FG1 418 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 SMYD5Q6GMV2 418 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 PRR23CQ6ZRP0 262 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 SCUBE3Q8IX30 993 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 CHPFQ8IZ52 775 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 ABCA7Q8IZY2 2146 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 SIX2Q9NPC8 291 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 ACP6Q9NPH0 428 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 PCDHGA5Q9Y5G8 931 aa22.14■■□□□ 1.13
HMGB3-205ENST00000455596 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.14■■□□□ 1.13
HMGB3-205ENST00000455596 TNRC6BQ9UPQ9 1833 aaKnown RBP22.14■■□□□ 1.13
HMGB3-205ENST00000455596 KCNJ18B7U540 433 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 GOLGA6L22H0YM25 854 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 FOXD2O60548 495 aaPredicted RBP22.13■■□□□ 1.13
HMGB3-205ENST00000455596 NCAM1P13591 858 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 WASP42768 502 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 ZNF445P59923 1031 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 KCNJ12Q14500 433 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 MPPE1Q53F39 396 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 MIIPQ5JXC2 388 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 UNC45BQ8IWX7 931 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 PGBD3Q8N328 593 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 GPT2Q8TD30 523 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 HMGB4Q8WW32 186 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 FAM149B1Q96BN6 582 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 SLC4A5Q9BY07 1137 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 SLC2A11Q9BYW1 496 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 STOML2Q9UJZ1 356 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 DNAJC12Q9UKB3 198 aa22.13■■□□□ 1.13
HMGB3-205ENST00000455596 SDK1Q7Z5N4 2213 aa22.12■■□□□ 1.13
HMGB3-205ENST00000455596 IGLV3-27P01718 113 aa22.12■■□□□ 1.13
HMGB3-205ENST00000455596 ADGRF1Q5T601 910 aa22.12■■□□□ 1.13
HMGB3-205ENST00000455596 NUGGCQ68CJ6 796 aa22.12■■□□□ 1.13
HMGB3-205ENST00000455596 ERMP1Q7Z2K6 904 aa22.12■■□□□ 1.13
HMGB3-205ENST00000455596 OLIG1Q8TAK6 271 aa22.12■■□□□ 1.13
HMGB3-205ENST00000455596 SPACA7Q96KW9 195 aa22.12■■□□□ 1.13
HMGB3-205ENST00000455596 ACOX2Q99424 681 aa22.12■■□□□ 1.13
HMGB3-205ENST00000455596 TRIM62Q9BVG3 475 aa22.12■■□□□ 1.13
HMGB3-205ENST00000455596 SAMSN1Q9NSI8 373 aaKnown RBP22.12■■□□□ 1.13
HMGB3-205ENST00000455596 DLL3Q9NYJ7 618 aa22.12■■□□□ 1.13
HMGB3-205ENST00000455596 CYTH4Q9UIA0 394 aa22.12■■□□□ 1.13
HMGB3-205ENST00000455596 CDV3Q9UKY7 258 aaKnown RBP22.12■■□□□ 1.13
HMGB3-205ENST00000455596 SPTBN4Q9H254 2564 aa22.11■■□□□ 1.13
HMGB3-205ENST00000455596 PES1O00541 588 aaKnown RBP22.11■■□□□ 1.13
HMGB3-205ENST00000455596 TBX4P57082 545 aa22.11■■□□□ 1.13
HMGB3-205ENST00000455596 PTK2Q05397 1052 aa22.11■■□□□ 1.13
HMGB3-205ENST00000455596 RING1Q06587 406 aa22.11■■□□□ 1.13
HMGB3-205ENST00000455596 GEN1Q17RS7 908 aa22.11■■□□□ 1.13
HMGB3-205ENST00000455596 PMS2CLQ68D20 193 aa22.11■■□□□ 1.13
HMGB3-205ENST00000455596 ANKS1BQ7Z6G8 1248 aa22.11■■□□□ 1.13
HMGB3-205ENST00000455596 TMEM110Q86TL2 294 aa22.11■■□□□ 1.13
HMGB3-205ENST00000455596 UCMAQ8WVF2 138 aa22.11■■□□□ 1.13
HMGB3-205ENST00000455596 PIWIL1Q96J94 861 aaKnown RBP22.11■■□□□ 1.13
HMGB3-205ENST00000455596 SERPINB11Q96P15 392 aa22.11■■□□□ 1.13
HMGB3-205ENST00000455596 GABRG3Q99928 467 aa22.11■■□□□ 1.13
HMGB3-205ENST00000455596 AJAP1Q9UKB5 411 aaPredicted RBP22.11■■□□□ 1.13
HMGB3-205ENST00000455596 E5RJQ4 531 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 GFRA2O00451 464 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 ZBTB24O43167 697 aaPredicted RBP22.1■■□□□ 1.13
HMGB3-205ENST00000455596 TSPAN3O60637 253 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 FYNP06241 537 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 ZNF806P0C7X5 589 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 GABRG2P18507 467 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 EEF1GP26641 437 aaKnown RBP22.1■■□□□ 1.13
HMGB3-205ENST00000455596 MPLP40238 635 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 P2RY2P41231 377 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 SLC11A2P49281 568 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 BYSLQ13895 437 aaKnown RBP22.1■■□□□ 1.13
HMGB3-205ENST00000455596 CKAP5Q14008 2032 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 CCDC6Q16204 474 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 TCP11X2Q5H9J9 407 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 RBM43Q6ZSC3 357 aaKnown RBP22.1■■□□□ 1.13
HMGB3-205ENST00000455596 BEND5Q7L4P6 421 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 ENOX1Q8TC92 643 aaKnown RBP22.1■■□□□ 1.13
HMGB3-205ENST00000455596 DQX1Q8TE96 717 aaKnown RBP22.1■■□□□ 1.13
HMGB3-205ENST00000455596 RLN3Q8WXF3 142 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 TMA16Q96EY4 203 aaKnown RBP22.1■■□□□ 1.13
HMGB3-205ENST00000455596 CLEC4EQ9ULY5 219 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 PCDHGC3Q9UN70 934 aa22.1■■□□□ 1.13
HMGB3-205ENST00000455596 NAALADL1Q9UQQ1 740 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms