RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 STK32AQ8WU08 396 aa12.58□□□□□ -0.4
USP40-210ENST00000454354 RNF139Q8WU17 664 aa12.58□□□□□ -0.4
USP40-210ENST00000454354 EDEM1Q92611 657 aa12.58□□□□□ -0.4
USP40-210ENST00000454354 PIWIL1Q96J94 861 aaKnown RBP12.58□□□□□ -0.4
USP40-210ENST00000454354 GABRG3Q99928 467 aa12.58□□□□□ -0.4
USP40-210ENST00000454354 CRACR2AQ9BSW2 395 aa12.58□□□□□ -0.4
USP40-210ENST00000454354 NUP62CLQ9H1M0 184 aa12.58□□□□□ -0.4
USP40-210ENST00000454354 ARRDC1-AS1Q9H2J1 176 aa12.58□□□□□ -0.4
USP40-210ENST00000454354 CD248Q9HCU0 757 aa12.58□□□□□ -0.4
USP40-210ENST00000454354 PLK2Q9NYY3 685 aa12.58□□□□□ -0.4
USP40-210ENST00000454354 APEX2Q9UBZ4 518 aa12.58□□□□□ -0.4
USP40-210ENST00000454354 SFMBT1Q9UHJ3 866 aa12.58□□□□□ -0.4
USP40-210ENST00000454354 CACNA1EQ15878 2313 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 A0A1W2PQF6 199 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 TCRBV21S2A2A0A5A6 115 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 BECN2A8MW95 431 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 MED7O43513 233 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 IGLV3-27P01718 113 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 CYBBP04839 570 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 KRT5P13647 590 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 HOXB2P14652 356 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 SLC9A1P19634 815 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 GNA15P30679 374 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 MPLP40238 635 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 P2RY2P41231 377 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 HARS2P49590 506 aaKnown RBP12.57□□□□□ -0.4
USP40-210ENST00000454354 ZNF445P59923 1031 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 RING1Q06587 406 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 MAN2A1Q16706 1144 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 EXOC3L4Q17RC7 722 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 BEND5Q7L4P6 421 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 DGLUCYQ7Z3D6 616 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 FAM114A1Q8IWE2 563 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 ZNF606Q8WXB4 792 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 SHC3Q92529 594 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 BHMTQ93088 406 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 RTKNQ9BST9 563 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 SLC2A11Q9BYW1 496 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 IRX2Q9BZI1 471 aaPredicted RBP12.57□□□□□ -0.4
USP40-210ENST00000454354 SIX2Q9NPC8 291 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 LMBRD1Q9NUN5 540 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 DACH1Q9UI36 760 aa12.57□□□□□ -0.4
USP40-210ENST00000454354 CDV3Q9UKY7 258 aaKnown RBP12.57□□□□□ -0.4
USP40-210ENST00000454354 BCLAF3A2AJT9 711 aaKnown RBP12.56□□□□□ -0.4
USP40-210ENST00000454354 PIK3R2O00459 728 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 SLC30A4O14863 429 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 NPC1O15118 1278 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 SART1O43290 800 aaKnown RBP12.56□□□□□ -0.4
USP40-210ENST00000454354 MSI1O43347 362 aaKnown RBP12.56□□□□□ -0.4
USP40-210ENST00000454354 FYNP06241 537 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 BCKDHBP21953 392 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 PON1P27169 355 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 ACADSBP45954 432 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 MTIF2P46199 727 aaKnown RBP12.56□□□□□ -0.4
USP40-210ENST00000454354 ATXN1P54253 815 aaKnown RBP12.56□□□□□ -0.4
USP40-210ENST00000454354 NNTQ13423 1086 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 ENPP2Q13822 863 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 TPD52L1Q16890 204 aaPredicted RBP12.56□□□□□ -0.4
USP40-210ENST00000454354 MAP7D1Q3KQU3 841 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 CT47A1Q5JQC4 288 aaPredicted RBP12.56□□□□□ -0.4
USP40-210ENST00000454354 MIIPQ5JXC2 388 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 NUGGCQ68CJ6 796 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 RNF43Q68DV7 783 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 DENND1BQ6P3S1 775 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 GJB7Q6PEY0 223 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 ANKS1BQ7Z6G8 1248 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 CHPFQ8IZ52 775 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 HMGB4Q8WW32 186 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 GOLGA1Q92805 767 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 ACOX2Q99424 681 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 SLC4A5Q9BY07 1137 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 VPS45Q9NRW7 570 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 BCCIPQ9P287 314 aaKnown RBP eCLIP12.56□□□□□ -0.4
USP40-210ENST00000454354 CYTH4Q9UIA0 394 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 ADAMTS9Q9P2N4 1935 aa12.56□□□□□ -0.4
USP40-210ENST00000454354 THAP12O43422 761 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 LETM1O95202 739 aaPredicted RBP12.55□□□□□ -0.4
USP40-210ENST00000454354 PRKCSHP14314 528 aaPredicted RBP12.55□□□□□ -0.4
USP40-210ENST00000454354 GABRG2P18507 467 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 HOXD9P28356 352 aaPredicted RBP12.55□□□□□ -0.4
USP40-210ENST00000454354 GBP1P32455 592 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 LIMK1P53667 647 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 APBA1Q02410 837 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 BYSLQ13895 437 aaKnown RBP12.55□□□□□ -0.4
USP40-210ENST00000454354 EIF4HQ15056 248 aaKnown RBP12.55□□□□□ -0.4
USP40-210ENST00000454354 GEN1Q17RS7 908 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 MPPE1Q53F39 396 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 SPDYCQ5MJ68 293 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 ADGRF1Q5T601 910 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 SDE2Q6IQ49 451 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 DPY19L2P1Q6NXN4 242 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 TMEM110Q86TL2 294 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 CREBRFQ8IUR6 639 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 IPO4Q8TEX9 1081 aaKnown RBP12.55□□□□□ -0.4
USP40-210ENST00000454354 DDI1Q8WTU0 396 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 AZIN2Q96A70 460 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 SPACA7Q96KW9 195 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 MIS12Q9H081 205 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 NDST4Q9H3R1 872 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 ACP6Q9NPH0 428 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms