RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 DENND1CQ8IV53 801 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 CHCHD4Q8N4Q1 142 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 DNASE2BQ8WZ79 361 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 GPR174Q9BXC1 333 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 CIPCQ9C0C6 399 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 MIR1-1HGQ9H1L0 117 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 APOBEC3GQ9HC16 384 aaKnown RBP13.94□□□□□ -0.18
HMGB3-204ENST00000448905 OLA1Q9NTK5 396 aaKnown RBP13.94□□□□□ -0.18
HMGB3-204ENST00000448905 WSB2Q9NYS7 404 aaPredicted RBP13.94□□□□□ -0.18
HMGB3-204ENST00000448905 MARCH2Q9P0N8 246 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 AGO1Q9UL18 857 aaKnown RBP13.94□□□□□ -0.18
HMGB3-204ENST00000448905 APOBEC2Q9Y235 224 aaKnown RBP13.94□□□□□ -0.18
HMGB3-204ENST00000448905 SLC12A8A0AV02 714 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 TRIM49P0CI25 452 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 TRIM49CP0CI26 452 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 HOXB3P14651 431 aaPredicted RBP13.93□□□□□ -0.18
HMGB3-204ENST00000448905 MAOBP27338 520 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 MFAP3P55082 362 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 YWHAGP61981 247 aaKnown RBP eCLIP13.93□□□□□ -0.18
HMGB3-204ENST00000448905 PPP3CAQ08209 521 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 SUZ12Q15022 739 aaKnown RBP13.93□□□□□ -0.18
HMGB3-204ENST00000448905 MPPE1Q53F39 396 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 FYB2Q5VWT5 728 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 ANKS1BQ7Z6G8 1248 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 GUF1Q8N442 669 aaKnown RBP13.93□□□□□ -0.18
HMGB3-204ENST00000448905 ANKRD52Q8NB46 1076 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 RNF139Q8WU17 664 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 TMEM121BQ9BXQ6 578 aaPredicted RBP13.93□□□□□ -0.18
HMGB3-204ENST00000448905 SLC6A17Q9H1V8 727 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 CISHQ9NSE2 258 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 RAB20Q9NX57 234 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 KLK13Q9UKR3 277 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 MAPK8IP1Q9UQF2 711 aa13.93□□□□□ -0.18
HMGB3-204ENST00000448905 METTL12A8MUP2 240 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 CETN3O15182 167 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 ZBED1O96006 694 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 EPHX1P07099 455 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 TPMTP51580 245 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 ZNF445P59923 1031 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 KRT85P78386 507 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 ENPP2Q13822 863 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 GEN1Q17RS7 908 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 SERPINA13PQ6UXR4 307 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 NAXDQ8IW45 347 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 CPXM2Q8N436 756 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 FBXL13Q8NEE6 735 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 SETD7Q8WTS6 366 aaKnown RBP13.92□□□□□ -0.18
HMGB3-204ENST00000448905 PLD4Q96BZ4 506 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 PIWIL1Q96J94 861 aaKnown RBP13.92□□□□□ -0.18
HMGB3-204ENST00000448905 IPO9Q96P70 1041 aaKnown RBP13.92□□□□□ -0.18
HMGB3-204ENST00000448905 MKRN2Q9H000 416 aaKnown RBP13.92□□□□□ -0.18
HMGB3-204ENST00000448905 PCED1AQ9H1Q7 454 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 LRRC4Q9HBW1 653 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 USP36Q9P275 1121 aaKnown RBP13.92□□□□□ -0.18
HMGB3-204ENST00000448905 HESX1Q9UBX0 185 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 KIAA1257Q9ULG3 409 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 HPSEQ9Y251 543 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 ATP6V1DQ9Y5K8 247 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 MYOFQ9NZM1 2061 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 PTPRDP23468 1912 aa13.92□□□□□ -0.18
HMGB3-204ENST00000448905 BCAT2O15382 392 aaPredicted RBP13.91□□□□□ -0.18
HMGB3-204ENST00000448905 CER1O95813 267 aa13.91□□□□□ -0.18
HMGB3-204ENST00000448905 EPB41P11171 864 aaKnown RBP13.91□□□□□ -0.18
HMGB3-204ENST00000448905 IL12RB1P42701 662 aa13.91□□□□□ -0.18
HMGB3-204ENST00000448905 TKTL1P51854 596 aa13.91□□□□□ -0.18
HMGB3-204ENST00000448905 YWHAEP62258 255 aaKnown RBP13.91□□□□□ -0.18
HMGB3-204ENST00000448905 ZNF234Q14588 700 aa13.91□□□□□ -0.18
HMGB3-204ENST00000448905 EDRF1Q3B7T1 1238 aa13.91□□□□□ -0.18
HMGB3-204ENST00000448905 ARHGAP17Q68EM7 881 aa13.91□□□□□ -0.18
HMGB3-204ENST00000448905 PM20D1Q6GTS8 502 aa13.91□□□□□ -0.18
HMGB3-204ENST00000448905 LRSAM1Q6UWE0 723 aa13.91□□□□□ -0.18
HMGB3-204ENST00000448905 RAB44Q7Z6P3 723 aaPredicted RBP13.91□□□□□ -0.18
HMGB3-204ENST00000448905 PIGZQ86VD9 579 aa13.91□□□□□ -0.18
HMGB3-204ENST00000448905 OR2I1PQ8NGU4 316 aa13.91□□□□□ -0.18
HMGB3-204ENST00000448905 TMA16Q96EY4 203 aaKnown RBP13.91□□□□□ -0.18
HMGB3-204ENST00000448905 HELZP42694 1942 aaKnown RBP13.9□□□□□ -0.18
HMGB3-204ENST00000448905 ATP5BP06576 529 aaKnown RBP13.9□□□□□ -0.18
HMGB3-204ENST00000448905 MATKP42679 507 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 MXI1P50539 228 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 NDUFA8P51970 172 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 RAD23BP54727 409 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 FAM193AP78312 1265 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 PDE4CQ08493 712 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 DPYDQ12882 1025 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 GRIK2Q13002 908 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 RAB41Q5JT25 222 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 DCAF12L1Q5VU92 463 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 ZNF557Q8N988 423 aaPredicted RBP13.9□□□□□ -0.18
HMGB3-204ENST00000448905 SLC4A11Q8NBS3 891 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 ADAMTS14Q8WXS8 1223 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 CAMK1GQ96NX5 476 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 CDC6Q99741 560 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 SCAND2PQ9GZW5 306 aaPredicted RBP13.9□□□□□ -0.18
HMGB3-204ENST00000448905 GAREM1Q9H706 876 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 KIAA1522Q9P206 1035 aaPredicted RBP13.9□□□□□ -0.18
HMGB3-204ENST00000448905 HBS1LQ9Y450 684 aaKnown RBP13.9□□□□□ -0.18
HMGB3-204ENST00000448905 ADAMTS9Q9P2N4 1935 aa13.9□□□□□ -0.18
HMGB3-204ENST00000448905 GJB3O75712 270 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 IGLV3-19P01714 112 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 FTH1P19P0C7X4 201 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms