RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 C9orf78Q9NZ63 289 aaPredicted RBP4.05□□□□□ -1.76
VPS41-207ENST00000439468 VPS4AQ9UN37 437 aa4.05□□□□□ -1.76
VPS41-207ENST00000439468 WDR91A4D1P6 747 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 FAM90A18PA6NE21 464 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 FAM90A16PA6NEW6 464 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 FAM90A9PA6NNJ1 464 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 FAM90A5PA8MXJ8 464 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 KIF28PB7ZC32 967 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 CES2O00748 559 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 NPHP1O15259 732 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 RPP40O75818 363 aaKnown RBP4.04□□□□□ -1.76
VPS41-207ENST00000439468 GLP2RO95838 553 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 PYGLP06737 847 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 ITGA2BP08514 1039 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 FAM90A15PP0C7V4 464 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 FAM90A14PP0C7W9 464 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 TMEM225BP0DP42 221 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 FPR3P25089 353 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 GKP32189 559 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 EIF4A1P60842 406 aaKnown RBP4.04□□□□□ -1.76
VPS41-207ENST00000439468 AP2B1P63010 937 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 PSG6Q00889 435 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 BFSP2Q13515 415 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 TRIM71Q2Q1W2 868 aaKnown RBP4.04□□□□□ -1.76
VPS41-207ENST00000439468 PRAMEF17Q5VTA0 474 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 TANGO2Q6ICL3 276 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 SLC44A2Q8IWA5 706 aaPredicted RBP4.04□□□□□ -1.76
VPS41-207ENST00000439468 SEMA6DQ8NFY4 1073 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 SLC22A17Q8WUG5 538 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 SMG7Q92540 1137 aaKnown RBP4.04□□□□□ -1.76
VPS41-207ENST00000439468 RTKNQ9BST9 563 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 ISCA1Q9BUE6 129 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 TP63Q9H3D4 680 aaPredicted RBP4.04□□□□□ -1.76
VPS41-207ENST00000439468 SAP30LQ9HAJ7 183 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 PRDM8Q9NQV8 689 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 HELLSQ9NRZ9 838 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 NKX1-2Q9UD57 310 aaPredicted RBP4.04□□□□□ -1.76
VPS41-207ENST00000439468 STEAP1Q9UHE8 339 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 CA14Q9ULX7 337 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 DAPP1Q9UN19 280 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 ADAMTS5Q9UNA0 930 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 SH2B3Q9UQQ2 575 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 PCDHB2Q9Y5E7 798 aa4.04□□□□□ -1.76
VPS41-207ENST00000439468 ARHGEF17Q96PE2 2063 aaPredicted RBP4.03□□□□□ -1.76
VPS41-207ENST00000439468 WIPF3A6NGB9 483 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 CGB1A6NKQ9 187 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 PSMD9O00233 223 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 KRT38O76015 456 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 CELA2AP08217 269 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 CYP2D6P10635 497 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 CKMT1AP12532 417 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 CREB1P16220 341 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 MPGP29372 298 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 MAPK9P45984 424 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 ZNF81P51508 661 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 CYP4F2P78329 520 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 PPFIA1Q13136 1202 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 AASDHQ4L235 1098 aaPredicted RBP4.03□□□□□ -1.76
VPS41-207ENST00000439468 L1TD1Q5T7N2 865 aaKnown RBP4.03□□□□□ -1.76
VPS41-207ENST00000439468 Q6ZWC4 215 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 PARS2Q7L3T8 475 aaKnown RBP4.03□□□□□ -1.76
VPS41-207ENST00000439468 P3H2Q8IVL5 708 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 PNLDC1Q8NA58 520 aaKnown RBP4.03□□□□□ -1.76
VPS41-207ENST00000439468 AFG1LQ8WV93 481 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 TRIM63Q969Q1 353 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 TRAPPC9Q96Q05 1148 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 MACROD1Q9BQ69 325 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 BRD8Q9H0E9 1235 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 TAF1DQ9H5J8 278 aaPredicted RBP4.03□□□□□ -1.76
VPS41-207ENST00000439468 NRIP3Q9NQ35 241 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 VPS45Q9NRW7 570 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 GGA3Q9NZ52 723 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 KIF17Q9P2E2 1029 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 MGAT4CQ9UBM8 478 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 FEM1BQ9UK73 627 aa4.03□□□□□ -1.76
VPS41-207ENST00000439468 EIF3FO00303 357 aaPredicted RBP4.02□□□□□ -1.77
VPS41-207ENST00000439468 ZNF213O14771 459 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 CTIFO43310 598 aaKnown RBP4.02□□□□□ -1.77
VPS41-207ENST00000439468 EXOC3O60645 756 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 CYP21A2P08686 494 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 DLDP09622 509 aaKnown RBP4.02□□□□□ -1.77
VPS41-207ENST00000439468 CNTFP26441 200 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 EPHB2P29323 1055 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 GSTM5P46439 218 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 ARL4CP56559 192 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 FAM3BP58499 235 aaPredicted RBP4.02□□□□□ -1.77
VPS41-207ENST00000439468 TFF2Q03403 129 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 PROSER3Q2NL68 480 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 TBC1D25Q3MII6 688 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 HSP90AB4PQ58FF6 505 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 MTX3Q5HYI7 312 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 EPHA10Q5JZY3 1008 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 ATPAF1Q5TC12 328 aaPredicted RBP4.02□□□□□ -1.77
VPS41-207ENST00000439468 CCDC144NLQ6NUI1 221 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 C16orf89Q6UX73 402 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 SERPINA13PQ6UXR4 307 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 TRIM72Q6ZMU5 477 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 RASGRP2Q7LDG7 609 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 FTSJ3Q8IY81 847 aaKnown RBP4.02□□□□□ -1.77
VPS41-207ENST00000439468 NRSN1Q8IZ57 195 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms