RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PRR29P0C7W0 189 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 CEBPAP49715 358 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 TFB1MQ8WVM0 346 aaKnown RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 RNF145Q96MT1 663 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 IFT80Q9P2H3 777 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 ZNF221Q9UK13 617 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 DNPEPQ9ULA0 475 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 CRTAMO95727 393 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 ADRA2BP18089 450 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 PTGER2P43116 358 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 SMAD1Q15797 465 aaKnown RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 LACTB2Q53H82 288 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 PLA2G4FQ68DD2 849 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 MB21D2Q8IYB1 491 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 C11orf70Q9BRQ4 267 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 NIF3L1Q9GZT8 377 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 RBAKQ9NYW8 714 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 PCYOX1Q9UHG3 505 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 MYH3P11055 1940 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 MYH15Q9Y2K3 1946 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 ITGAXP20702 1163 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 SLC38A2Q96QD8 506 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 APOL6Q9BWW8 343 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 MCM8Q9UJA3 840 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 PDLIM1O00151 329 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 ZNF24P17028 368 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 ERFP50548 548 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 SLC30A8Q8IWU4 369 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 ASIC4Q96FT7 647 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 PCDH10Q9P2E7 1040 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 UMODL1Q5DID0 1318 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 CAMTA2O94983 1202 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CLTBP09497 229 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 TOB2Q14106 344 aaPredicted RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 CWF19L1Q69YN2 538 aaKnown RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 PROSER1Q86XN7 944 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 AHI1Q8N157 1196 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 TMEM109Q9BVC6 243 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CFL2Q9Y281 166 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 UBOX5O94941 541 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 C7P10643 843 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 TIE1P35590 1138 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 NPTX2P47972 431 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 ITGA8P53708 1063 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 PHKG1Q16816 387 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 KIAA1841Q6NSI8 718 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 LRRC34Q8IZ02 419 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 GALNT4Q8N4A0 578 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 ZCCHC2Q9C0B9 1178 aaKnown RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 SLC30A1Q9Y6M5 507 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 RGL2O15211 777 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 RMDN3Q96TC7 470 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 FAM213AQ9BRX8 229 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 KCNF1Q9H3M0 494 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 SUGCTQ9HAC7 445 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 MYH7P12883 1935 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 KPNA5O15131 536 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 TARSP26639 723 aaKnown RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 MVKQ03426 396 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 PRR5LQ6MZQ0 368 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 FEZF2Q8TBJ5 459 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 RPRD1AQ96P16 312 aaPredicted RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 HDHD2Q9H0R4 259 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 SLC6A15Q9H2J7 730 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 ANAPC2Q9UJX6 822 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 MGAT4AQ9UM21 535 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 UTYO14607 1347 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 TULP3O75386 442 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 GEMP55040 296 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 XKR3Q5GH77 459 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 TSHZ1Q6ZSZ6 1077 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 KLF6Q99612 283 aaPredicted RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 ZCWPW1Q9H0M4 648 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 KCNN2Q9H2S1 579 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CAB39LQ9H9S4 337 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 FRMPD4Q14CM0 1322 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 ORC5O43913 435 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CNPP09543 421 aaKnown RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 AQP5P55064 265 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 SHROOM1Q2M3G4 852 aaPredicted RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 SBK1Q52WX2 424 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 KRT77Q7Z794 578 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 C12orf56Q8IXR9 622 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 URGCPQ8TCY9 931 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CKAP2Q8WWK9 683 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 ERMAPQ96PL5 475 aaPredicted RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 THUMPD3Q9BV44 507 aaKnown RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 GDF3Q9NR23 364 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CLN6Q9NWW5 311 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 F8W810 466 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CES1P23141 567 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 DCKP27707 260 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 SDC2P34741 201 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 MTMR1Q13613 665 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CDKAL1Q5VV42 579 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 NMD3Q96D46 503 aaKnown RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 OR14I1A6ND48 311 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 ZW10O43264 779 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 MAGEC1O60732 1142 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CLEC16AQ2KHT3 1053 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms