RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 PLEKHO1Q53GL0 409 aaPredicted RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 CERCAMQ5T4B2 595 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 SPATA1Q5VX52 437 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 NAIF1Q69YI7 327 aaPredicted RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 ABLIM2Q6H8Q1 611 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 TAPT1Q6NXT6 567 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 TMPRSS9Q7Z410 1059 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 TBC1D1Q86TI0 1168 aaPredicted RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 XYLT1Q86Y38 959 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 RHOT2Q8IXI1 618 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 CCDC89Q8N998 374 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 PSD4Q8NDX1 1056 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 BPIFB1Q8TDL5 484 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 RFFLQ8WZ73 363 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 CPT1BQ92523 772 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 GRAMD1AQ96CP6 724 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 TWNKQ96RR1 684 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 TTPALQ9BTX7 342 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 PTDSS2Q9BVG9 487 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 RNPEPQ9H4A4 650 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 AGO3Q9H9G7 860 aaKnown RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 LPAR3Q9UBY5 353 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 NRBP1Q9UHY1 535 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 VPS51Q9UID3 782 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 NAP1L2Q9ULW6 460 aaPredicted RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 KCTD3Q9Y597 815 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 BCORQ6W2J9 1755 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 COL11A2P13942 1736 aaPredicted RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 SCN7AQ01118 1682 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 CDHR2Q9BYE9 1310 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 ZNF541Q9H0D2 1346 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 TCAF2A6NFQ2 919 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 SAC3D1A6NKF1 404 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 H0Y3Z8 333 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 DNPH1O43598 174 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 B4GALT3O60512 393 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 CDC14BO60729 498 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 CELF2O95319 508 aaKnown RBP4.57□□□□□ -1.68
HMGB3-203ENST00000430118 STARD3NLO95772 234 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 IFIT1P09914 478 aaKnown RBP4.57□□□□□ -1.68
HMGB3-203ENST00000430118 ARP10275 920 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 FCER1AP12319 257 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 SLC6A2P23975 617 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 CNTFP26441 200 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 MTHFSP49914 203 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 EPHB4P54760 987 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.57□□□□□ -1.68
HMGB3-203ENST00000430118 MYO1EQ12965 1108 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 ANKRD1Q15327 319 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 SMAD1Q15797 465 aaKnown RBP4.57□□□□□ -1.68
HMGB3-203ENST00000430118 NOMO2Q5JPE7 1267 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 AGAP9Q5VTM2 703 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 CACHD1Q5VU97 1274 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 ZNF530Q6P9A1 599 aaPredicted RBP4.57□□□□□ -1.68
HMGB3-203ENST00000430118 NEK10Q6ZWH5 1172 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 HTR3DQ70Z44 454 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 MED25Q71SY5 747 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 SPARTQ8N0X7 666 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 LGI4Q8N135 537 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 ANKRD35Q8N283 1001 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 TMEM57Q8N5G2 664 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 SCAMP5Q8TAC9 235 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 AFG1LQ8WV93 481 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 CENPIQ92674 756 aaPredicted RBP4.57□□□□□ -1.68
HMGB3-203ENST00000430118 C7orf26Q96N11 449 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 KCNC2Q96PR1 638 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 TRAPPC9Q96Q05 1148 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 WDR24Q96S15 920 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 C12orf65Q9H3J6 166 aaKnown RBP4.57□□□□□ -1.68
HMGB3-203ENST00000430118 ALG13Q9NP73 1137 aaKnown RBP4.57□□□□□ -1.68
HMGB3-203ENST00000430118 TRIM36Q9NQ86 728 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 ADARB2Q9NS39 739 aaKnown RBP4.57□□□□□ -1.68
HMGB3-203ENST00000430118 RXFP3Q9NSD7 469 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 SMC4Q9NTJ3 1288 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 JAG2Q9Y219 1238 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 CDYLQ9Y232 598 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 SLC30A1Q9Y6M5 507 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 TRPM7Q96QT4 1865 aa4.57□□□□□ -1.68
HMGB3-203ENST00000430118 ANKRD18BA2A2Z9 1011 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 FAM90A18PA6NE21 464 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 FAM90A16PA6NEW6 464 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 FAM90A9PA6NNJ1 464 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 FAM90A5PA8MXJ8 464 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 TISP43B9A030 160 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 USP1O94782 785 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 RASAL1O95294 804 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 LARGE1O95461 756 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 FAM90A15PP0C7V4 464 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 FAM90A14PP0C7W9 464 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 SRGAP2BP0DMP2 458 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 KCNA2P16389 499 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 ITGALP20701 1170 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 ALDH1B1P30837 517 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 ANXA11P50995 505 aaKnown RBP4.56□□□□□ -1.68
HMGB3-203ENST00000430118 AFF3P51826 1226 aaKnown RBP4.56□□□□□ -1.68
HMGB3-203ENST00000430118 SEC24CP53992 1094 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 PRKAA2P54646 552 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 LILRA4P59901 499 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 PPP2CBP62714 309 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 PPP2CAP67775 309 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms