RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 NHLRC4P0CG21 123 aaPredicted RBP4.75□□□□□ -1.65
USP40-204ENST00000427947 MMP8P22894 467 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 JAK3P52333 1124 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 POLE2P56282 527 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 AP2B1P63010 937 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 CBFBQ13951 182 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 PRKG1Q13976 671 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 DHX8Q14562 1220 aaKnown RBP4.75□□□□□ -1.65
USP40-204ENST00000427947 KCNB1Q14721 858 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 GORABQ5T7V8 394 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 FCRLBQ6BAA4 426 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 DCDC5Q6ZRR9 648 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 TRABD2AQ86V40 505 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 CCDC117Q8IWD4 279 aaPredicted RBP4.75□□□□□ -1.65
USP40-204ENST00000427947 EXOC8Q8IYI6 725 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 NKAPQ8N5F7 415 aaKnown RBP4.75□□□□□ -1.65
USP40-204ENST00000427947 PNLDC1Q8NA58 520 aaKnown RBP4.75□□□□□ -1.65
USP40-204ENST00000427947 STT3BQ8TCJ2 826 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 CCDC17Q96LX7 622 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 PAAF1Q9BRP4 392 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 HERPUD2Q9BSE4 406 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 PABPC3Q9H361 631 aaKnown RBP4.75□□□□□ -1.65
USP40-204ENST00000427947 MLXIPQ9HAP2 919 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 FZD4Q9ULV1 537 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 PCDHB7Q9Y5E2 793 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 TCRBV5S1A1TA0A578 114 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 GXYLT2A0PJZ3 443 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 M0QZQ0 153 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 CLIC1O00299 241 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 IPO5O00410 1097 aaKnown RBP4.74□□□□□ -1.65
USP40-204ENST00000427947 PIP5K1CO60331 668 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 PPP6R2O75170 966 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 PROP1O75360 226 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 MATN1P21941 496 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 THBS4P35443 961 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 PROK1P58294 105 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 WDR5P61964 334 aaKnown RBP4.74□□□□□ -1.65
USP40-204ENST00000427947 LARS2Q15031 903 aaKnown RBP4.74□□□□□ -1.65
USP40-204ENST00000427947 FAM187BQ17R55 369 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 PROSER3Q2NL68 480 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 AWAT1Q58HT5 328 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 PRAMEF17Q5VTA0 474 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 ANKRD40Q6AI12 368 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 TANGO2Q6ICL3 276 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 JMJD6Q6NYC1 403 aaPredicted RBP4.74□□□□□ -1.65
USP40-204ENST00000427947 ACSM6Q6P461 480 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 C16orf89Q6UX73 402 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 ADGRG3Q86Y34 549 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 SLC44A2Q8IWA5 706 aaPredicted RBP4.74□□□□□ -1.65
USP40-204ENST00000427947 SMC5Q8IY18 1101 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 SPATA5Q8NB90 893 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 SCAMP5Q8TAC9 235 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 ADAMTS18Q8TE60 1221 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 TRAPPC12Q8WVT3 735 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 HMGB4Q8WW32 186 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 RSC1A1Q92681 617 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 FAR2Q96K12 515 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 RITA1Q96K30 269 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 TMEM120AQ9BXJ8 343 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 ADGRE3Q9BY15 652 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 BRD8Q9H0E9 1235 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 MYH16Q9H6N6 1097 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 PRDM8Q9NQV8 689 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 RXFP3Q9NSD7 469 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 ABHD10Q9NUJ1 306 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 NFU1Q9UMS0 254 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 CNTN6Q9UQ52 1028 aa4.74□□□□□ -1.65
USP40-204ENST00000427947 COL11A2P13942 1736 aaPredicted RBP4.73□□□□□ -1.65
USP40-204ENST00000427947 LOC105369274A0A096LPK9 316 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 LOC102723532A0A0G2JNH3 316 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 FAM90A18PA6NE21 464 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 FAM90A16PA6NEW6 464 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 HMX3A6NHT5 357 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 FAM90A9PA6NNJ1 464 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 FAM90A5PA8MXJ8 464 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 BTBD19C9JJ37 291 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 POC1B-GALNT4F8VUJ3 575 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 M0QYT0 321 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 C1RP00736 705 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 SLC3A2P08195 630 aaKnown RBP4.73□□□□□ -1.65
USP40-204ENST00000427947 FAM90A15PP0C7V4 464 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 FAM90A14PP0C7W9 464 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 PNLIPRP1P54315 467 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 INHBEP58166 350 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 RNASELQ05823 741 aaKnown RBP4.73□□□□□ -1.65
USP40-204ENST00000427947 SF3A3Q12874 501 aaKnown RBP eCLIP4.73□□□□□ -1.65
USP40-204ENST00000427947 POSTNQ15063 836 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 TRIM60Q495X7 471 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 CERKLQ49MI3 558 aaPredicted RBP4.73□□□□□ -1.65
USP40-204ENST00000427947 C4orf46Q504U0 113 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 INO80DQ53TQ3 878 aaPredicted RBP4.73□□□□□ -1.65
USP40-204ENST00000427947 TMEM63BQ5T3F8 832 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 VSTM1Q6UX27 236 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 ZNF788Q6ZQV5 615 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 RAB11FIP2Q7L804 512 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 CHSY1Q86X52 802 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 OR4N4Q8N0Y3 316 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 GALNT4Q8N4A0 578 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 OR52L2PQ8NGH6 319 aa4.73□□□□□ -1.65
USP40-204ENST00000427947 OTUD7AQ8TE49 926 aaPredicted RBP4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms