RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MAGED4Q96JG8 741 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ACTR8Q9H981 624 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 HMX1Q9NP08 348 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TRIM10Q9UDY6 481 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 AMACRQ9UHK6 382 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 MRTO4Q9UKD2 239 aaKnown RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 PCDHB5Q9Y5E4 795 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 SLC12A8A0AV02 714 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 NCF1BA6NI72 391 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 NCF1CA8MVU1 366 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 THRAP10827 490 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 COX7A2P14406 83 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 NCF1P14598 390 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF7P17097 686 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 NR2C2P49116 596 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ATN1P54259 1190 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-204ENST00000423058 NECTIN1Q15223 517 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 ZMYND11Q15326 602 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CBWD2Q8IUF1 395 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 CACTIN-AS1Q8N1I8 211 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 STK40Q8N2I9 435 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 HMG20AQ9NP66 347 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 KLK14Q9P0G3 267 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 PYCARDQ9ULZ3 195 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 RPTORQ8N122 1335 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 PER1O15534 1290 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 VDRP11473 427 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 DNAJB2P25686 324 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 TMED10P49755 219 aaKnown RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 NUDT2P50583 147 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 RAB2AP61019 212 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 CUL2Q13617 745 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 TRIM63Q969Q1 353 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 SPATA5L1Q9BVQ7 753 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 ABCG4Q9H172 646 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 V9GYQ6 96 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 CST8O60676 142 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 PDE9AO76083 593 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 LBPP18428 481 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 RASA1P20936 1047 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 POU1F1P28069 291 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 NTSP30990 170 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 RPL9P32969 192 aaKnown RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 PRKAA2P54646 552 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 GPR141Q7Z602 305 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 FAM20CQ8IXL6 584 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 OR8H2Q8N162 312 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 NSL1Q96IY1 281 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 AIFM3Q96NN9 605 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 MAP3K14Q99558 947 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 TTLL2Q9BWV7 592 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF518BQ9C0D4 1074 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 RIBC2Q9H4K1 309 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 ZBTB14O43829 449 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 OR10H2O60403 315 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 AXLP30530 894 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 MAGEA4P43358 317 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 RAD23AP54725 363 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 AGBL2Q5U5Z8 902 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 BARGINQ6ZT62 677 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 ZDHHC17Q8IUH5 632 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 TBC1D10CQ8IV04 446 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 FAM71DQ8N9W8 422 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 CXorf40AQ8TE69 158 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 SMARCD1Q96GM5 515 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 MARCOQ9UEW3 520 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 NPHP3-ACAD11A0A0J9YXS1 232 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 SSU72P8A0A1W2PR75 194 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 OR6B1O95007 311 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 ACO1P21399 889 aaKnown RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 PSMD4P55036 377 aaKnown RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 NFIXQ14938 502 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 PTGES3Q15185 160 aaKnown RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 NAB2Q15742 525 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 LYPLAL1Q5VWZ2 237 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 ACAD10Q6JQN1 1059 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 MPZL3Q6UWV2 235 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 TSPAN14Q8NG11 270 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 APOL4Q9BPW4 351 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 KCTD14Q9BQ13 255 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 NCKIPSDQ9NZQ3 722 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 TBC1D3BA6NDS4 549 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 H3BNH8 94 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF23P17027 643 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 OR1E1P30953 314 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 CTCFP49711 727 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 VPS72Q15906 364 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 AMHR2Q16671 573 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 CYP2A13Q16696 494 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 GALNT18Q6P9A2 607 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 KLHL35Q6PF15 583 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 OR52L1Q8NGH7 329 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 TRPC4APQ8TEL6 797 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 HPS3Q969F9 1004 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 ATXN3LQ9H3M9 355 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 RERGLQ9H628 205 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 CAAP1Q9H8G2 361 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 OGTO15294 1046 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 CD3EAPO15446 510 aaKnown RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 FGF19O95750 216 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms