RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 INO80BQ9C086 356 aaPredicted RBP11.04□□□□□ -0.64
USP54-204ENST00000422491 ZNF518BQ9C0D4 1074 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 TBC1D22BQ9NU19 505 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 PACSIN3Q9UKS6 424 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 PAIP2BQ9ULR5 123 aaKnown RBP11.04□□□□□ -0.64
USP54-204ENST00000422491 CCNE2O96020 404 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 THRAP10827 490 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 NCF2P19878 526 aaPredicted RBP11.04□□□□□ -0.64
USP54-204ENST00000422491 HOXA10P31260 410 aaPredicted RBP11.04□□□□□ -0.64
USP54-204ENST00000422491 HSPA13P48723 471 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 MRPS22P82650 360 aaKnown RBP11.04□□□□□ -0.64
USP54-204ENST00000422491 CNTN2Q02246 1040 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 SLC44A4Q53GD3 710 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 ZFP1Q6P2D0 407 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 ANKRD23Q86SG2 305 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 LDHDQ86WU2 507 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 KCTD6Q8NC69 237 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 FNIP1Q8TF40 1166 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 RSPH1Q8WYR4 309 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 SLC35B4Q969S0 331 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 SLX1AQ9BQ83 275 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 HERC5Q9UII4 1024 aaKnown RBP11.04□□□□□ -0.64
USP54-204ENST00000422491 WDR37Q9Y2I8 494 aa11.04□□□□□ -0.64
USP54-204ENST00000422491 PLIN3O60664 434 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 PRKCGP05129 697 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 EIF4BP23588 611 aaKnown RBP11.03□□□□□ -0.64
USP54-204ENST00000422491 ALDH3B2P48448 385 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 SERPINB9P50453 376 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 KLF10Q13118 480 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 MPP3Q13368 585 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 MTMR1Q13613 665 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 DOK7Q18PE1 504 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 N4BP2L1Q5TBK1 243 aaPredicted RBP11.03□□□□□ -0.64
USP54-204ENST00000422491 ACER1Q8TDN7 264 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 CSRNP1Q96S65 589 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 HAPLN2Q9GZV7 340 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 COPS7BQ9H9Q2 264 aaPredicted RBP11.03□□□□□ -0.64
USP54-204ENST00000422491 LIN28AQ9H9Z2 209 aaKnown RBP11.03□□□□□ -0.64
USP54-204ENST00000422491 INIPQ9NRY2 104 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 PAK5Q9P286 719 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 PRPF19Q9UMS4 504 aaKnown RBP11.03□□□□□ -0.64
USP54-204ENST00000422491 KANSL1LA0AUZ9 987 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 KRT3P12035 628 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 CD1EP15812 388 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 PORP16435 677 aaPredicted RBP11.03□□□□□ -0.64
USP54-204ENST00000422491 MAGEA3P43357 314 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 MAGEA6P43360 314 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 PDK1Q15118 436 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 PTPN20Q4JDL3 420 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 FAXCQ5TGI0 409 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 PACS1Q6VY07 963 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 CHERPQ8IWX8 916 aaKnown RBP11.03□□□□□ -0.64
USP54-204ENST00000422491 OR5B17Q8NGF7 314 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 GSDMBQ8TAX9 411 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 PPP4R1Q8TF05 950 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 TMIGD2Q96BF3 282 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 LRRC39Q96DD0 335 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 HOMER2Q9NSB8 354 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 TJP2Q9UDY2 1190 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 PCSK1NQ9UHG2 260 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 STYXL1Q9Y6J8 313 aa11.03□□□□□ -0.64
USP54-204ENST00000422491 PRSS51A0A1B0GVH4 220 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 DKC1O60832 514 aaKnown RBP eCLIP11.02□□□□□ -0.64
USP54-204ENST00000422491 TRPA1O75762 1119 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 ALDOAP04075 364 aaKnown RBP11.02□□□□□ -0.64
USP54-204ENST00000422491 IDO1P14902 403 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 GRK2P25098 689 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 STT3AP46977 705 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 HARS2P49590 506 aaKnown RBP11.02□□□□□ -0.64
USP54-204ENST00000422491 LIG4P49917 911 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 THOP1P52888 689 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 MMRN1Q13201 1228 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 ZNF423Q2M1K9 1284 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 PATL1Q86TB9 770 aaKnown RBP11.02□□□□□ -0.64
USP54-204ENST00000422491 C10orf107Q8IVU9 208 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 TSPAN14Q8NG11 270 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 TFAP2BQ92481 460 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 RTP4Q96DX8 246 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 PKP2Q99959 881 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 CALN1Q9BXU9 219 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 SDCBP2Q9H190 292 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 RBAKQ9NYW8 714 aaPredicted RBP11.02□□□□□ -0.64
USP54-204ENST00000422491 AGO2Q9UKV8 859 aaKnown RBP11.02□□□□□ -0.64
USP54-204ENST00000422491 BARX2Q9UMQ3 279 aaPredicted RBP11.02□□□□□ -0.64
USP54-204ENST00000422491 PCDHGC3Q9UN70 934 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 FAF1Q9UNN5 650 aaPredicted RBP11.02□□□□□ -0.64
USP54-204ENST00000422491 TMX2Q9Y320 296 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 RNF11Q9Y3C5 154 aa11.02□□□□□ -0.64
USP54-204ENST00000422491 GLRA3O75311 464 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 NPM3O75607 178 aaKnown RBP11.02□□□□□ -0.65
USP54-204ENST00000422491 XRCC1P18887 633 aaPredicted RBP11.02□□□□□ -0.65
USP54-204ENST00000422491 MIPP30301 263 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 NUMBP49757 651 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 FLOT2Q14254 428 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 ZNF394Q53GI3 561 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 PIGGQ5H8A4 983 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 FSCBQ5H9T9 825 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 ZBTB41Q5SVQ8 909 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 ELMSAN1Q6PJG2 1045 aa11.02□□□□□ -0.65
USP54-204ENST00000422491 NCCRP1Q6ZVX7 275 aaPredicted RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms