RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 KCNV2Q8TDN2 545 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 TNIP3Q96KP6 325 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 DUSP9Q99956 384 aaKnown RBP13.57□□□□□ -0.24
LINC00339-202ENST00000416769 GPR174Q9BXC1 333 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 MIR1-1HGQ9H1L0 117 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 TLR8Q9NR97 1041 aaKnown RBP13.57□□□□□ -0.24
LINC00339-202ENST00000416769 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.57□□□□□ -0.24
LINC00339-202ENST00000416769 DMAC2Q9NW81 257 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 SCML2Q9UQR0 700 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 GPSM3Q9Y4H4 160 aa13.57□□□□□ -0.24
LINC00339-202ENST00000416769 URB1O60287 2271 aaKnown RBP13.56□□□□□ -0.24
LINC00339-202ENST00000416769 IGSF10Q6WRI0 2623 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 FAM221BA6H8Z2 402 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 BIN1O00499 593 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 CBFA2T3O75081 653 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 NDUFS2O75306 463 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 ZNF217O75362 1048 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 HLA-DRAP01903 254 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 FAM200BP0CF97 657 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 BMP6P22004 513 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 CD6P30203 668 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 ATP5C1P36542 298 aaKnown RBP13.56□□□□□ -0.24
LINC00339-202ENST00000416769 MFAP3P55082 362 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 ACAP1Q15027 740 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 COL28A1Q2UY09 1125 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 ZSCAN23Q3MJ62 389 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 ZACNQ401N2 412 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 C10orf120Q5SQS8 335 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 FYB2Q5VWT5 728 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 SV2AQ7L0J3 742 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 CRYBG2Q8N1P7 616 aa13.56□□□□□ -0.24
LINC00339-202ENST00000416769 XPO6Q96QU8 1125 aaKnown RBP13.56□□□□□ -0.24
LINC00339-202ENST00000416769 WSB2Q9NYS7 404 aaPredicted RBP13.56□□□□□ -0.24
LINC00339-202ENST00000416769 USP36Q9P275 1121 aaKnown RBP13.56□□□□□ -0.24
LINC00339-202ENST00000416769 SMG1Q96Q15 3661 aaKnown RBP13.55□□□□□ -0.24
LINC00339-202ENST00000416769 BPTFQ12830 3046 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 MEI4A8MW99 385 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 ASS1P00966 412 aaKnown RBP13.55□□□□□ -0.24
LINC00339-202ENST00000416769 PENKP01210 267 aaPredicted RBP13.55□□□□□ -0.24
LINC00339-202ENST00000416769 TRIM49P0CI25 452 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 TRIM49CP0CI26 452 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 NCAM1P13591 858 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 HLA-EP13747 358 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 CD58P19256 250 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 DPP6P42658 865 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 ZNF423Q2M1K9 1284 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 CT47A1Q5JQC4 288 aaPredicted RBP13.55□□□□□ -0.24
LINC00339-202ENST00000416769 DCAF12L1Q5VU92 463 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 TMEM215Q68D42 235 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 SDE2Q6IQ49 451 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 FAM124AQ86V42 546 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 GUF1Q8N442 669 aaKnown RBP13.55□□□□□ -0.24
LINC00339-202ENST00000416769 ZNF366Q8N895 744 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 MLKLQ8NB16 471 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 RBBP8NLQ8NC74 664 aaPredicted RBP13.55□□□□□ -0.24
LINC00339-202ENST00000416769 TAS1R2Q8TE23 839 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 ADAMTS14Q8WXS8 1223 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 NDRG1Q92597 394 aaKnown RBP13.55□□□□□ -0.24
LINC00339-202ENST00000416769 CRELD1Q96HD1 420 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 HNRNPABQ99729 332 aaKnown RBP13.55□□□□□ -0.24
LINC00339-202ENST00000416769 ANP32EQ9BTT0 268 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 KCTD10Q9H3F6 313 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 FBXO44Q9H4M3 255 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 COMMD8Q9NX08 183 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 TOR4AQ9NXH8 423 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 WDR35Q9P2L0 1181 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 RASAL2Q9UJF2 1139 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 NAGPAQ9UK23 515 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 FBXO10Q9UK96 956 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 PCOLCE2Q9UKZ9 415 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 BTBD3Q9Y2F9 522 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 RAXQ9Y2V3 346 aa13.55□□□□□ -0.24
LINC00339-202ENST00000416769 MUC22E2RYF6 1773 aaPredicted RBP13.54□□□□□ -0.24
LINC00339-202ENST00000416769 SYCE3A1L190 88 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 GOLGA8CPA6NN73 597 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 PPP1R3GB7ZBB8 358 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 KCNK3O14649 394 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 NR3C1P04150 777 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 SYPP08247 313 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 ATXN1LP0C7T5 689 aaKnown RBP13.54□□□□□ -0.24
LINC00339-202ENST00000416769 CORO1AP31146 461 aaKnown RBP13.54□□□□□ -0.24
LINC00339-202ENST00000416769 PIK3CAP42336 1068 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 PRCPP42785 496 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 TPMTP51580 245 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 KIF11P52732 1056 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 COPAP53621 1224 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 PPP3CAQ08209 521 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 EFEMP1Q12805 493 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 STIM1Q13586 685 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 ZNF394Q53GI3 561 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 SOWAHCQ53LP3 525 aaPredicted RBP13.54□□□□□ -0.24
LINC00339-202ENST00000416769 CEP135Q66GS9 1140 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 CCNI2Q6ZMN8 369 aaPredicted RBP13.54□□□□□ -0.24
LINC00339-202ENST00000416769 CYFIP2Q96F07 1278 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 DHTKD1Q96HY7 919 aaPredicted RBP13.54□□□□□ -0.24
LINC00339-202ENST00000416769 BBC3Q96PG8 261 aaPredicted RBP13.54□□□□□ -0.24
LINC00339-202ENST00000416769 FUCA2Q9BTY2 467 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 MMRN2Q9H8L6 949 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 PRDM16Q9HAZ2 1276 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 ANO10Q9NW15 660 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms