RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CWH43Q9H720 699 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 ELAC1Q9H777 363 aaKnown RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 VPS37BQ9H9H4 285 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 PSMC3IPQ9P2W1 217 aaPredicted RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 TSPAN16Q9UKR8 245 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 USP15Q9Y4E8 981 aaPredicted RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 TCP11X1B4DZS4 312 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 PRPSAP2O60256 369 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 TBX10O75333 385 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 RPL22P35268 128 aaKnown RBP15.38■□□□□ 0.05
USP4-203ENST00000415188 SCTRP47872 440 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 ROR1Q01973 937 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 PPARDQ03181 441 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 NOMO1Q15155 1222 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 PUS10Q3MIT2 529 aaKnown RBP15.38■□□□□ 0.05
USP4-203ENST00000415188 OR6B2Q6IFH4 312 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 SLC27A1Q6PCB7 646 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 RGS9BPQ6ZS82 235 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 ECHDC2Q86YB7 292 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 ZBED8Q8IZ13 594 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 GJD3Q8N144 294 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 ANKRD42Q8N9B4 389 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 COLGALT1Q8NBJ5 622 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 RNF169Q8NCN4 708 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 BEST2Q8NFU1 509 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 CPT1BQ92523 772 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 SNX27Q96L92 541 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 CASD1Q96PB1 797 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 SLC4A5Q9BY07 1137 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 CYLDQ9NQC7 956 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 PCDHB12Q9Y5F1 795 aa15.38■□□□□ 0.05
USP4-203ENST00000415188 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.38■□□□□ 0.05
USP4-203ENST00000415188 SPAG6O75602 509 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 PDGFRAP16234 1089 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 CYP3A5P20815 502 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 TGM2P21980 687 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 GCAP28676 217 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 AXLP30530 894 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 YARSP54577 528 aaKnown RBP15.37■□□□□ 0.05
USP4-203ENST00000415188 DYNLT1P63172 113 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 RNASELQ05823 741 aaKnown RBP15.37■□□□□ 0.05
USP4-203ENST00000415188 ORC1Q13415 861 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 ADAM15Q13444 863 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 GOLGA7BQ2TAP0 167 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 PKDCCQ504Y2 493 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 ARHGAP17Q68EM7 881 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 C4orf22Q6V702 233 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 FAM183BPQ6ZVS7 135 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 ARCQ7LC44 396 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 TRPM8Q7Z2W7 1104 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 RBM23Q86U06 439 aaKnown RBP15.37■□□□□ 0.05
USP4-203ENST00000415188 PDIK1LQ8N165 341 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 MGARPQ8TDB4 240 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 RXFP2Q8WXD0 754 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 HSPH1Q92598 858 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 C1QTNF1Q9BXJ1 281 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 TRABDQ9H4I3 376 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 HESX1Q9UBX0 185 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 PCSK1NQ9UHG2 260 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 ARL2BPQ9Y2Y0 163 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 TRIP11Q15643 1979 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 PLXNA4Q9HCM2 1894 aa15.37■□□□□ 0.05
USP4-203ENST00000415188 E5RJQ4 531 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 FGF18O76093 207 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 NPTXRO95502 500 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 RBP3P10745 1247 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 CREB1P16220 341 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 PBX3P40426 434 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 NRIP1P48552 1158 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 CDH6P55285 790 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 GEMIN4P57678 1058 aaKnown RBP15.36■□□□□ 0.05
USP4-203ENST00000415188 SPARCL1Q14515 664 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 KCNT1Q5JUK3 1230 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 CLLU1OSQ5K130 101 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 NOTUMQ6P988 496 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 SPATA21Q7Z572 469 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 TMEM110Q86TL2 294 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 UBA3Q8TBC4 463 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 SPATA18Q8TC71 538 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 PYROXD1Q8WU10 500 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 RNF157Q96PX1 679 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 SMC6Q96SB8 1091 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 CALN1Q9BXU9 219 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 TBK1Q9UHD2 729 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 SLC12A4Q9UP95 1085 aa15.36■□□□□ 0.05
USP4-203ENST00000415188 FAM86C2PA6NEL3 165 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 CFAP73A6NFT4 308 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 MDM4O15151 490 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 CHADO15335 359 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 XPOTO43592 962 aaKnown RBP15.35■□□□□ 0.05
USP4-203ENST00000415188 RASSF9O75901 435 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 NDUFV1P49821 464 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 ERVFC1P60507 584 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 SLC6A3Q01959 620 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 XRCC4Q13426 336 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 MPP2Q14168 576 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 DPYSL3Q14195 570 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 KRT81Q14533 505 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 LRRC14Q15048 493 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 ZBTB6Q15916 424 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms