RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 SPRP35270 261 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-204ENST00000412568 COL16A1Q07092 1604 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-204ENST00000412568 NAPEPLDQ6IQ20 393 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 TTC27Q6P3X3 843 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 ANKRD52Q8NB46 1076 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 CD99L2Q8TCZ2 262 aa11.53□□□□□ -0.56
PTPRF-204ENST00000412568 IARS2Q9NSE4 1012 aaKnown RBP11.53□□□□□ -0.56
PTPRF-204ENST00000412568 PTPRJQ12913 1337 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 WDR27A2RRH5 827 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 FSCN2O14926 492 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 SNX2O60749 519 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 CCR1P32246 355 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 ATXN1P54253 815 aaKnown RBP11.52□□□□□ -0.56
PTPRF-204ENST00000412568 DRG2P55039 364 aaKnown RBP11.52□□□□□ -0.56
PTPRF-204ENST00000412568 PRKCZQ05513 592 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 ITGA7Q13683 1181 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 AUHQ13825 339 aaKnown RBP11.52□□□□□ -0.56
PTPRF-204ENST00000412568 HSP90AA5PQ58FG0 334 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 NT5DC4Q86YG4 428 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 TWNKQ96RR1 684 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 LRRC19Q9H756 370 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 OR12D3Q9UGF7 316 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 SLC8A2Q9UPR5 921 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 NR2E3Q9Y5X4 410 aa11.52□□□□□ -0.56
PTPRF-204ENST00000412568 MYH10P35580 1976 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 BUD23O43709 281 aaKnown RBP11.52□□□□□ -0.57
PTPRF-204ENST00000412568 LRCH4O75427 683 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 RAG1P15918 1043 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 NRLP54845 237 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 NOGQ13253 232 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 PTK6Q13882 451 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 CYB5D1Q6P9G0 228 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 DEFB118Q96PH6 123 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 PCYT2Q99447 389 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 FICDQ9BVA6 458 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 MANSC1Q9H8J5 431 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 SH3BP1Q9Y3L3 701 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 hCG_1818297A0A087WSY0 165 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 CILPO75339 1184 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 FBXO21O94952 628 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 MBL2P11226 248 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-204ENST00000412568 NNMTP40261 264 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 SCNN1BP51168 640 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 SH3BGRP55822 239 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-204ENST00000412568 ILDR2Q71H61 639 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 DDIASQ8IXT1 998 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 SLC4A11Q8NBS3 891 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 STKLD1Q8NE28 680 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 DTX3LQ8TDB6 740 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 R3HDMLQ9H3Y0 253 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 FZD8Q9H461 694 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 PRDM12Q9H4Q4 367 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 TRMT13Q9NUP7 481 aaKnown RBP11.52□□□□□ -0.57
PTPRF-204ENST00000412568 STOML1Q9UBI4 398 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 SFMBT1Q9UHJ3 866 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 GLI3P10071 1580 aa11.52□□□□□ -0.57
PTPRF-204ENST00000412568 MYH6P13533 1939 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 ZWINTO95229 277 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 TCF4P15884 667 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 TARSP26639 723 aaKnown RBP11.51□□□□□ -0.57
PTPRF-204ENST00000412568 CLCNKBP51801 687 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 CDH18Q13634 790 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 TMTC4Q5T4D3 741 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 TTC39BQ5VTQ0 682 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-204ENST00000412568 ATP6V0D2Q8N8Y2 350 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 WNT8BQ93098 351 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 E2F7Q96AV8 911 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 RNF157Q96PX1 679 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 SMIM35A0A1B0GVV1 85 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 TRDMT1O14717 391 aaKnown RBP11.51□□□□□ -0.57
PTPRF-204ENST00000412568 HOXC6P09630 235 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 ZBTB48P10074 688 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-204ENST00000412568 NDUFV1P49821 464 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 BTG3Q14201 252 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-204ENST00000412568 EML3Q32P44 896 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 KBTBD12Q3ZCT8 623 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 ANKRD20A8PQ5CZ79 823 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 MON1BQ7L1V2 547 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 UNC93AQ86WB7 457 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 ATAD1Q8NBU5 361 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 MYLPFQ96A32 169 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 PPCSQ9HAB8 311 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 CDHR5Q9HBB8 845 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 CYP4F12Q9HCS2 524 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 TMEM39AQ9NV64 488 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 SHOC2Q9UQ13 582 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 PCDHB5Q9Y5E4 795 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 AKAP11Q9UKA4 1901 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 ZBTB24O43167 697 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-204ENST00000412568 NDUFS3O75489 264 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 MT-CO1P00395 513 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 FAAP100Q0VG06 881 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 TMED1Q13445 227 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 C1orf146Q5VVC0 180 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 OLFML2BQ68BL8 750 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 PTAR1Q7Z6K3 402 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-204ENST00000412568 STRA8Q7Z7C7 330 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 LONP2Q86WA8 852 aa11.51□□□□□ -0.57
PTPRF-204ENST00000412568 LSM7Q9UK45 103 aaKnown RBP11.51□□□□□ -0.57
PTPRF-204ENST00000412568 STRCQ7RTU9 1775 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms