RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 ZNF667Q5HYK9 610 aa17.54■□□□□ 0.4
CHMP3-203ENST00000409225 KCNT1Q5JUK3 1230 aa17.54■□□□□ 0.4
CHMP3-203ENST00000409225 SERPINA13PQ6UXR4 307 aa17.54■□□□□ 0.4
CHMP3-203ENST00000409225 ZNF843Q8N446 348 aa17.54■□□□□ 0.4
CHMP3-203ENST00000409225 LHX5Q9H2C1 402 aa17.54■□□□□ 0.4
CHMP3-203ENST00000409225 CSNK1G1Q9HCP0 422 aa17.54■□□□□ 0.4
CHMP3-203ENST00000409225 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.54■□□□□ 0.4
CHMP3-203ENST00000409225 AK5Q9Y6K8 562 aa17.54■□□□□ 0.4
CHMP3-203ENST00000409225 NUMA1Q14980 2115 aa17.54■□□□□ 0.4
CHMP3-203ENST00000409225 MYH10P35580 1976 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 TGFB1I1O43294 461 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 FSBPO95073 299 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 KLKB1P03952 638 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 HMBSP08397 361 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 CASP4P49662 377 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 ARID5AQ03989 594 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 INAVAQ3KP66 663 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 C6orf118Q5T5N4 469 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 ADAT2Q7Z6V5 191 aaKnown RBP17.53■□□□□ 0.4
CHMP3-203ENST00000409225 NELFCDQ8IXH7 590 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 PDILTQ8N807 584 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 XXYLT1Q8NBI6 393 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 OR2T3Q8NH03 318 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 PIWIL1Q96J94 861 aaKnown RBP17.53■□□□□ 0.4
CHMP3-203ENST00000409225 VRTNQ9H8Y1 702 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 HMGXB4Q9UGU5 601 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 NAGPAQ9UK23 515 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 CLEC4EQ9ULY5 219 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 CKAP5Q14008 2032 aa17.53■□□□□ 0.4
CHMP3-203ENST00000409225 EIF3DO15371 548 aaKnown RBP eCLIP17.52■□□□□ 0.4
CHMP3-203ENST00000409225 RRP8O43159 456 aaKnown RBP17.52■□□□□ 0.4
CHMP3-203ENST00000409225 FAM200BP0CF97 657 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 HNF1BP35680 557 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 CHKAP35790 457 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 CTSKP43235 329 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 NDST1P52848 882 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 CEBPZQ03701 1054 aaKnown RBP17.52■□□□□ 0.4
CHMP3-203ENST00000409225 RABEP1Q15276 862 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 E2F5Q15329 346 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 KLHDC10Q6PID8 442 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 C12orf29Q8N999 325 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 LSM14AQ8ND56 463 aaKnown RBP17.52■□□□□ 0.4
CHMP3-203ENST00000409225 BIRC7Q96CA5 298 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 OSGEPQ9NPF4 335 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 RASAL2Q9UJF2 1139 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 ZNF510Q9Y2H8 683 aa17.52■□□□□ 0.4
CHMP3-203ENST00000409225 VPS37CA5D8V6 355 aaPredicted RBP17.51■□□□□ 0.39
CHMP3-203ENST00000409225 HHLA1C9JL84 531 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 CBX4O00257 560 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 ENC1O14682 589 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 CD2BP2O95400 341 aaKnown RBP17.51■□□□□ 0.39
CHMP3-203ENST00000409225 SEMA4FO95754 770 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 CORO1AP31146 461 aaKnown RBP17.51■□□□□ 0.39
CHMP3-203ENST00000409225 DNAJC3Q13217 504 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 NCOA4Q13772 614 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 EIF4HQ15056 248 aaKnown RBP17.51■□□□□ 0.39
CHMP3-203ENST00000409225 TMEM215Q68D42 235 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 CLEC20AQ6ZU45 233 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 EPM2AIP1Q7L775 607 aaPredicted RBP17.51■□□□□ 0.39
CHMP3-203ENST00000409225 GATAD2AQ86YP4 633 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 ZNF366Q8N895 744 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 RBBP8NLQ8NC74 664 aaPredicted RBP17.51■□□□□ 0.39
CHMP3-203ENST00000409225 ZNF507Q8TCN5 953 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 PLEKHO2Q8TD55 490 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 PCDHA5Q9Y5H7 936 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 ZNF462Q96JM2 2506 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 KNTC1P50748 2209 aa17.51■□□□□ 0.39
CHMP3-203ENST00000409225 CYSRT1A8MQ03 144 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 CAPN9O14815 690 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 CYBBP04839 570 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 CD27P26842 260 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 C21orf59P57076 290 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 BMT2Q1RMZ1 405 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 FNDC3BQ53EP0 1204 aaKnown RBP17.5■□□□□ 0.39
CHMP3-203ENST00000409225 PRAMEF14Q5SWL7 426 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 SCD5Q86SK9 330 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 TADA2BQ86TJ2 420 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 CRYBG2Q8N1P7 616 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 CNDP2Q96KP4 475 aaKnown RBP17.5■□□□□ 0.39
CHMP3-203ENST00000409225 DCLK3Q9C098 648 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 BTBD1Q9H0C5 482 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 AGO1Q9UL18 857 aaKnown RBP17.5■□□□□ 0.39
CHMP3-203ENST00000409225 PCDHGA1Q9Y5H4 931 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 PTPRQQ9UMZ3 2332 aa17.5■□□□□ 0.39
CHMP3-203ENST00000409225 PAPSS1O43252 624 aaPredicted RBP17.49■□□□□ 0.39
CHMP3-203ENST00000409225 TSPAN3O60637 253 aa17.49■□□□□ 0.39
CHMP3-203ENST00000409225 RFPL3O75679 317 aa17.49■□□□□ 0.39
CHMP3-203ENST00000409225 VNN1O95497 513 aa17.49■□□□□ 0.39
CHMP3-203ENST00000409225 LDOC1O95751 146 aaPredicted RBP17.49■□□□□ 0.39
CHMP3-203ENST00000409225 RALAP11233 206 aa17.49■□□□□ 0.39
CHMP3-203ENST00000409225 BCAT1P54687 386 aa17.49■□□□□ 0.39
CHMP3-203ENST00000409225 ASIC1P78348 528 aa17.49■□□□□ 0.39
CHMP3-203ENST00000409225 COG7P83436 770 aa17.49■□□□□ 0.39
CHMP3-203ENST00000409225 EFEMP1Q12805 493 aa17.49■□□□□ 0.39
CHMP3-203ENST00000409225 TARDBPQ13148 414 aaKnown RBP eCLIP17.49■□□□□ 0.39
CHMP3-203ENST00000409225 CAMK2GQ13555 558 aaPredicted RBP17.49■□□□□ 0.39
CHMP3-203ENST00000409225 FAM26FQ5R3K3 315 aa17.49■□□□□ 0.39
CHMP3-203ENST00000409225 FAM173BQ6P4H8 233 aa17.49■□□□□ 0.39
CHMP3-203ENST00000409225 DENND1CQ8IV53 801 aa17.49■□□□□ 0.39
CHMP3-203ENST00000409225 DDI1Q8WTU0 396 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms