RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 GOLGA8OA6NCC3 632 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 GOLGA8NF8WBI6 632 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 DCXO43602 365 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 FGF3P11487 239 aaPredicted RBP21.68■■□□□ 1.06
CTCF-202ENST00000401394 UBA1P22314 1058 aaKnown RBP21.68■■□□□ 1.06
CTCF-202ENST00000401394 TP53INP2Q8IXH6 220 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 PYROXD2Q8N2H3 581 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 REPS2Q8NFH8 660 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 ZNF518BQ9C0D4 1074 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 SOX13Q9UN79 622 aa21.68■■□□□ 1.06
CTCF-202ENST00000401394 ARID2Q68CP9 1835 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 KLF11O14901 512 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 PRPSAP2O60256 369 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 RAG1P15918 1043 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 TAP1Q03518 808 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 CCDC14Q49A88 953 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 EFHC1Q5JVL4 640 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 DHDDSQ86SQ9 333 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 FLAD1Q8NFF5 587 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 STK32BQ9NY57 414 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 DGKIO75912 1065 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 SERPINA6P08185 405 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 SLC1A6P48664 564 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 PDE1CQ14123 709 aaPredicted RBP21.67■■□□□ 1.06
CTCF-202ENST00000401394 ZNF772Q68DY9 489 aaPredicted RBP21.67■■□□□ 1.06
CTCF-202ENST00000401394 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.67■■□□□ 1.06
CTCF-202ENST00000401394 FAM172AQ8WUF8 416 aa21.67■■□□□ 1.06
CTCF-202ENST00000401394 TFB1MQ8WVM0 346 aaKnown RBP21.67■■□□□ 1.06
CTCF-202ENST00000401394 F8W8V4 182 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 OGTO15294 1046 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 CHADO15335 359 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 PRKCGP05129 697 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 PRKCHP24723 683 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 GRAMD1BQ3KR37 738 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 ZNF667Q5HYK9 610 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 RABGAP1LQ5R372 815 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 MBLAC2Q68D91 279 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 PDSS2Q86YH6 399 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 CLMNQ96JQ2 1002 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 PHF12Q96QT6 1004 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 TMEM216Q9P0N5 145 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 HES2Q9Y543 173 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 A0A1B0GTW7 788 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 CCDC78A2IDD5 438 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 GSTA2P09210 222 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 CLCN3P51790 818 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 CUL3Q13618 768 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 PPM1LQ5SGD2 360 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 C6orf163Q5TEZ5 329 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 TRAPPC9Q96Q05 1148 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 NDNQ99608 321 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 SNRNP25Q9BV90 132 aaKnown RBP21.66■■□□□ 1.06
CTCF-202ENST00000401394 MYOZ2Q9NPC6 264 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 EFR3BQ9Y2G0 817 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 C2CD4BA6NLJ0 364 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 H0YCG3 227 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 GPR25O00155 361 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 ZBTB14O43829 449 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 AMHP03971 560 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 GPD1P21695 349 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 STAT5BP51692 787 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 DLG2Q15700 870 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 AMHR2Q16671 573 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 NDRG1Q92597 394 aaKnown RBP21.66■■□□□ 1.06
CTCF-202ENST00000401394 SORT1Q99523 831 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 LGMNQ99538 433 aa21.66■■□□□ 1.06
CTCF-202ENST00000401394 MRPL4Q9BYD3 311 aaKnown RBP21.66■■□□□ 1.06
CTCF-202ENST00000401394 BRCA2P51587 3418 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 MGAMO43451 1857 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 ERVK-10P10266 1014 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 IDH3AP50213 366 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 CDK7P50613 346 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 ZNF143P52747 638 aaPredicted RBP21.65■■□□□ 1.06
CTCF-202ENST00000401394 ITGA9Q13797 1035 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 ZRSR2Q15696 482 aaKnown RBP21.65■■□□□ 1.06
CTCF-202ENST00000401394 JADE1Q6IE81 842 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 PMF1Q6P1K2 205 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 B4GALNT2Q8NHY0 566 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 MAPK15Q8TD08 544 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 CPB2Q96IY4 423 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 PCDH18Q9HCL0 1135 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 PDP2Q9P2J9 529 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 COL2A1P02458 1487 aaPredicted RBP21.65■■□□□ 1.06
CTCF-202ENST00000401394 USP12O75317 370 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 VCLP18206 1134 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 MLH1P40692 756 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 RANBP1P43487 201 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 INHBCP55103 352 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 IGBP1P78318 339 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 HSDL1Q3SXM5 330 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 PLD6Q8N2A8 252 aaKnown RBP21.65■■□□□ 1.06
CTCF-202ENST00000401394 PIWIL2Q8TC59 973 aaKnown RBP21.65■■□□□ 1.06
CTCF-202ENST00000401394 MCRS1Q96EZ8 462 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 IRAK4Q9NWZ3 460 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 CDH22Q9UJ99 828 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 POMPQ9Y244 141 aa21.65■■□□□ 1.06
CTCF-202ENST00000401394 LACTBL1A8MY62 500 aa21.64■■□□□ 1.06
CTCF-202ENST00000401394 GABBR2O75899 941 aa21.64■■□□□ 1.06
CTCF-202ENST00000401394 PCLAFQ15004 111 aa21.64■■□□□ 1.06
CTCF-202ENST00000401394 FAM83AQ86UY5 434 aa21.64■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms