RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 TRIM21P19474 475 aaKnown RBP29.93■■■□□ 2.38
HMGB1-205ENST00000399494 KIF11P52732 1056 aa29.93■■■□□ 2.38
HMGB1-205ENST00000399494 ATXN3P54252 364 aaPredicted RBP29.93■■■□□ 2.38
HMGB1-205ENST00000399494 RABEPKQ7Z6M1 372 aa29.93■■■□□ 2.38
HMGB1-205ENST00000399494 SCD5Q86SK9 330 aa29.93■■■□□ 2.38
HMGB1-205ENST00000399494 SLC35C1Q96A29 364 aa29.93■■■□□ 2.38
HMGB1-205ENST00000399494 P2RY11Q96G91 374 aa29.93■■■□□ 2.38
HMGB1-205ENST00000399494 AKAP13Q12802 2813 aa29.93■■■□□ 2.38
HMGB1-205ENST00000399494 ADAMTS9Q9P2N4 1935 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 ZZEF1O43149 2961 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 WASH3PC4AMC7 463 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 GFRA2O00451 464 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 C10orf120Q5SQS8 335 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 HDDC3Q8N4P3 179 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 ZNF419Q96HQ0 510 aaPredicted RBP29.92■■■□□ 2.38
HMGB1-205ENST00000399494 MRGPRX1Q96LB2 322 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 SLC6A17Q9H1V8 727 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 RAB20Q9NX57 234 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 CACNA2D2Q9NY47 1150 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 PLK2Q9NYY3 685 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 RAD54BQ9Y620 910 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 ASPMQ8IZT6 3477 aa29.92■■■□□ 2.38
HMGB1-205ENST00000399494 SPAARA0A1B0GVQ0 90 aa29.91■■■□□ 2.38
HMGB1-205ENST00000399494 ARHGAP33O14559 1287 aa29.91■■■□□ 2.38
HMGB1-205ENST00000399494 CILPO75339 1184 aa29.91■■■□□ 2.38
HMGB1-205ENST00000399494 STC2O76061 302 aa29.91■■■□□ 2.38
HMGB1-205ENST00000399494 CBWD6Q4V339 395 aa29.91■■■□□ 2.38
HMGB1-205ENST00000399494 CBWD3Q5JTY5 395 aa29.91■■■□□ 2.38
HMGB1-205ENST00000399494 CBWD5Q5RIA9 395 aa29.91■■■□□ 2.38
HMGB1-205ENST00000399494 BHMTQ93088 406 aa29.91■■■□□ 2.38
HMGB1-205ENST00000399494 CD93Q9NPY3 652 aa29.91■■■□□ 2.38
HMGB1-205ENST00000399494 NAGPAQ9UK23 515 aa29.91■■■□□ 2.38
HMGB1-205ENST00000399494 USP3Q9Y6I4 520 aa29.91■■■□□ 2.38
HMGB1-205ENST00000399494 TMEM8BA6NDV4 472 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 HYAL3O43820 417 aaPredicted RBP29.9■■■□□ 2.38
HMGB1-205ENST00000399494 OPHN1O60890 802 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 KLKB1P03952 638 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 PSEN1P49768 467 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 SIM1P81133 766 aaPredicted RBP29.9■■■□□ 2.38
HMGB1-205ENST00000399494 CCDC183Q5T5S1 534 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 CCDC186Q7Z3E2 898 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 CREBRFQ8IUR6 639 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 MINDY1Q8N5J2 469 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 HSPA12BQ96MM6 686 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 DUSP16Q9BY84 665 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 NIF3L1Q9GZT8 377 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 PCDH15Q96QU1 1955 aa29.9■■■□□ 2.38
HMGB1-205ENST00000399494 PPP1R26Q5T8A7 1209 aaPredicted RBP29.89■■■□□ 2.38
HMGB1-205ENST00000399494 OR2I1PQ8NGU4 316 aa29.89■■■□□ 2.38
HMGB1-205ENST00000399494 SEMA4DQ92854 862 aa29.89■■■□□ 2.38
HMGB1-205ENST00000399494 CLIC5Q9NZA1 410 aa29.89■■■□□ 2.38
HMGB1-205ENST00000399494 NEUROG3Q9Y4Z2 214 aa29.89■■■□□ 2.38
HMGB1-205ENST00000399494 CD59P13987 128 aa29.88■■■□□ 2.37
HMGB1-205ENST00000399494 CD58P19256 250 aa29.88■■■□□ 2.37
HMGB1-205ENST00000399494 FMO5P49326 533 aa29.88■■■□□ 2.37
HMGB1-205ENST00000399494 FAM193AP78312 1265 aa29.88■■■□□ 2.37
HMGB1-205ENST00000399494 SASS6Q6UVJ0 657 aa29.88■■■□□ 2.37
HMGB1-205ENST00000399494 RBM43Q6ZSC3 357 aaKnown RBP29.88■■■□□ 2.37
HMGB1-205ENST00000399494 DNAAF2Q9NVR5 837 aaKnown RBP29.88■■■□□ 2.37
HMGB1-205ENST00000399494 ZNF510Q9Y2H8 683 aa29.88■■■□□ 2.37
HMGB1-205ENST00000399494 SLC27A6Q9Y2P4 619 aa29.88■■■□□ 2.37
HMGB1-205ENST00000399494 UTP18Q9Y5J1 556 aaKnown RBP eCLIP29.88■■■□□ 2.37
HMGB1-205ENST00000399494 NDUFS2O75306 463 aa29.87■■■□□ 2.37
HMGB1-205ENST00000399494 PENKP01210 267 aaPredicted RBP29.87■■■□□ 2.37
HMGB1-205ENST00000399494 ERCC5P28715 1186 aaPredicted RBP29.87■■■□□ 2.37
HMGB1-205ENST00000399494 MARSP56192 900 aaKnown RBP29.87■■■□□ 2.37
HMGB1-205ENST00000399494 CETN1Q12798 172 aa29.87■■■□□ 2.37
HMGB1-205ENST00000399494 TADA2BQ86TJ2 420 aa29.87■■■□□ 2.37
HMGB1-205ENST00000399494 METTL3Q86U44 580 aaKnown RBP29.87■■■□□ 2.37
HMGB1-205ENST00000399494 MSRB2Q9Y3D2 182 aa29.87■■■□□ 2.37
HMGB1-205ENST00000399494 STON1Q9Y6Q2 735 aa29.87■■■□□ 2.37
HMGB1-205ENST00000399494 SYPP08247 313 aa29.86■■■□□ 2.37
HMGB1-205ENST00000399494 RALAP11233 206 aa29.86■■■□□ 2.37
HMGB1-205ENST00000399494 COG7P83436 770 aa29.86■■■□□ 2.37
HMGB1-205ENST00000399494 FYB2Q5VWT5 728 aa29.86■■■□□ 2.37
HMGB1-205ENST00000399494 TRIM59Q8IWR1 403 aa29.86■■■□□ 2.37
HMGB1-205ENST00000399494 RGL4Q8IZJ4 473 aa29.86■■■□□ 2.37
HMGB1-205ENST00000399494 MED15Q96RN5 788 aa29.86■■■□□ 2.37
HMGB1-205ENST00000399494 FAM124BQ9H5Z6 455 aaPredicted RBP29.86■■■□□ 2.37
HMGB1-205ENST00000399494 KLK13Q9UKR3 277 aa29.86■■■□□ 2.37
HMGB1-205ENST00000399494 COQ4Q9Y3A0 265 aa29.86■■■□□ 2.37
HMGB1-205ENST00000399494 IGF2RP11717 2491 aa29.86■■■□□ 2.37
HMGB1-205ENST00000399494 CACNA1EQ15878 2313 aa29.85■■■□□ 2.37
HMGB1-205ENST00000399494 CHKAP35790 457 aa29.85■■■□□ 2.37
HMGB1-205ENST00000399494 SYCP2LQ5T4T6 812 aa29.85■■■□□ 2.37
HMGB1-205ENST00000399494 KIAA1324Q6UXG2 1013 aaKnown RBP29.85■■■□□ 2.37
HMGB1-205ENST00000399494 FOXJ1Q92949 421 aa29.85■■■□□ 2.37
HMGB1-205ENST00000399494 HEXIM2Q96MH2 286 aaKnown RBP29.85■■■□□ 2.37
HMGB1-205ENST00000399494 CDK5RAP1Q96SZ6 601 aaKnown RBP29.85■■■□□ 2.37
HMGB1-205ENST00000399494 DNAI2Q9GZS0 605 aa29.85■■■□□ 2.37
HMGB1-205ENST00000399494 THAP10Q9P2Z0 257 aaPredicted RBP29.85■■■□□ 2.37
HMGB1-205ENST00000399494 GJB3O75712 270 aa29.84■■■□□ 2.37
HMGB1-205ENST00000399494 MFAP3P55082 362 aa29.84■■■□□ 2.37
HMGB1-205ENST00000399494 KCNH2Q12809 1159 aa29.84■■■□□ 2.37
HMGB1-205ENST00000399494 ENPP2Q13822 863 aa29.84■■■□□ 2.37
HMGB1-205ENST00000399494 GEN1Q17RS7 908 aa29.84■■■□□ 2.37
HMGB1-205ENST00000399494 FUT11Q495W5 492 aa29.84■■■□□ 2.37
HMGB1-205ENST00000399494 ZNF394Q53GI3 561 aa29.84■■■□□ 2.37
HMGB1-205ENST00000399494 CT47A1Q5JQC4 288 aaPredicted RBP29.84■■■□□ 2.37
HMGB1-205ENST00000399494 FAM114A1Q8IWE2 563 aa29.84■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms