RNA–Protein interactions for RNA: ENST00000397442.5

CPNE1-203, Transcript of copine 1, humanhuman

TSL 5 BASIC

Gene CPNE1, Length 1,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-203ENST00000397442 KAZNQ674X7 775 aa28.55■■■□□ 2.16
CPNE1-203ENST00000397442 VSIG1Q86XK7 387 aa28.55■■■□□ 2.16
CPNE1-203ENST00000397442 TKTL2Q9H0I9 626 aa28.55■■■□□ 2.16
CPNE1-203ENST00000397442 PLEKHA4Q9H4M7 779 aa28.55■■■□□ 2.16
CPNE1-203ENST00000397442 MAN1C1Q9NR34 630 aa28.55■■■□□ 2.16
CPNE1-203ENST00000397442 ARHGEF38Q9NXL2 777 aa28.55■■■□□ 2.16
CPNE1-203ENST00000397442 TRPM5Q9NZQ8 1165 aa28.55■■■□□ 2.16
CPNE1-203ENST00000397442 UXTQ9UBK9 157 aaPredicted RBP28.55■■■□□ 2.16
CPNE1-203ENST00000397442 F11P03951 625 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 KRT81Q14533 505 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 NAA30Q147X3 362 aaPredicted RBP28.54■■■□□ 2.16
CPNE1-203ENST00000397442 RTL10Q7L3V2 364 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 MAP7D3Q8IWC1 876 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 SLC39A13Q96H72 371 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 TLR6Q9Y2C9 796 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 CDH23Q9H251 3354 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 CCDC188H7C350 402 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 ZMYND10O75800 440 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 PPP3CCP48454 512 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 TERF1P54274 439 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 NNTQ13423 1086 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 PPP6R3Q5H9R7 873 aaPredicted RBP28.54■■■□□ 2.16
CPNE1-203ENST00000397442 BRMS1LQ5PSV4 323 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 PPM1LQ5SGD2 360 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 TEX35Q5T0J7 233 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 TMC8Q8IU68 726 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 FAF2Q96CS3 445 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 MARCH2Q9P0N8 246 aa28.54■■■□□ 2.16
CPNE1-203ENST00000397442 ZNF487B1APH4 448 aa28.53■■■□□ 2.16
CPNE1-203ENST00000397442 SMAD3P84022 425 aaKnown RBP28.53■■■□□ 2.16
CPNE1-203ENST00000397442 PPP2R5DQ14738 602 aa28.53■■■□□ 2.16
CPNE1-203ENST00000397442 ERCC6LQ2NKX8 1250 aa28.53■■■□□ 2.16
CPNE1-203ENST00000397442 EFHC2Q5JST6 749 aa28.53■■■□□ 2.16
CPNE1-203ENST00000397442 TIFAQ96CG3 184 aa28.53■■■□□ 2.16
CPNE1-203ENST00000397442 FCRL2Q96LA5 508 aaPredicted RBP28.53■■■□□ 2.16
CPNE1-203ENST00000397442 CDK5RAP1Q96SZ6 601 aaKnown RBP28.53■■■□□ 2.16
CPNE1-203ENST00000397442 ZNF670Q9BS34 389 aa28.53■■■□□ 2.16
CPNE1-203ENST00000397442 R3HDM2Q9Y2K5 976 aaKnown RBP28.53■■■□□ 2.16
CPNE1-203ENST00000397442 CCL16O15467 120 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 RFPL2O75678 378 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 TJP3O95049 919 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 CCR1P32246 355 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 TUBP50607 506 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 SEMA3BQ13214 749 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 CYP1B1Q16678 543 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 ARL13BQ3SXY8 428 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 HECTD3Q5T447 861 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 KLHDC10Q6PID8 442 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 BBS12Q6ZW61 710 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 RBM23Q86U06 439 aaKnown RBP28.52■■■□□ 2.16
CPNE1-203ENST00000397442 HS6ST3Q8IZP7 471 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 MAIP1Q8WWC4 291 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 RNF34Q969K3 372 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 RNF157Q96PX1 679 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 DDX47Q9H0S4 455 aaKnown RBP28.52■■■□□ 2.16
CPNE1-203ENST00000397442 TMEM51Q9NW97 253 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 HCFC2Q9Y5Z7 792 aa28.52■■■□□ 2.16
CPNE1-203ENST00000397442 KCNU1A8MYU2 1149 aa28.51■■■□□ 2.16
CPNE1-203ENST00000397442 TRIP4Q15650 581 aaPredicted RBP28.51■■■□□ 2.16
CPNE1-203ENST00000397442 ANKRD20A8PQ5CZ79 823 aa28.51■■■□□ 2.16
CPNE1-203ENST00000397442 CHRDL2Q6WN34 429 aa28.51■■■□□ 2.16
CPNE1-203ENST00000397442 GAREM2Q75VX8 874 aa28.51■■■□□ 2.16
CPNE1-203ENST00000397442 MIB1Q86YT6 1006 aa28.51■■■□□ 2.16
CPNE1-203ENST00000397442 HDAC7Q8WUI4 952 aa28.51■■■□□ 2.16
CPNE1-203ENST00000397442 KRT12Q99456 494 aa28.51■■■□□ 2.16
CPNE1-203ENST00000397442 CWC15Q9P013 229 aaKnown RBP28.51■■■□□ 2.16
CPNE1-203ENST00000397442 RASAL2Q9UJF2 1139 aa28.51■■■□□ 2.16
CPNE1-203ENST00000397442 DENND4CQ5VZ89 1909 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 GOLGA6L10A0A0M3HER8 536 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 FAM72CH0Y354 149 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 RFXAPO00287 272 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 COCHO43405 550 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 OAS1P00973 400 aaKnown RBP28.51■■■□□ 2.15
CPNE1-203ENST00000397442 IGLV3-27P01718 113 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 HOXA9P31269 272 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 ATP5C1P36542 298 aaKnown RBP28.51■■■□□ 2.15
CPNE1-203ENST00000397442 TBX4P57082 545 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 FAM72AQ5TYM5 149 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 FAM72DQ6L9T8 149 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 FAM72BQ86X60 149 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 KLHL7Q8IXQ5 586 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 PQLC3Q8N755 202 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 C12orf50Q8NA57 414 aaPredicted RBP28.51■■■□□ 2.15
CPNE1-203ENST00000397442 PCDH19Q8TAB3 1148 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 UBXN4Q92575 508 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 CSPG4P5Q96PW8 444 aa28.51■■■□□ 2.15
CPNE1-203ENST00000397442 SLTMQ9NWH9 1034 aaKnown RBP eCLIP28.51■■■□□ 2.152e-10■□□□□ 11.3
CPNE1-203ENST00000397442 C2orf78A6NCI8 922 aa28.5■■■□□ 2.15
CPNE1-203ENST00000397442 CST8O60676 142 aa28.5■■■□□ 2.15
CPNE1-203ENST00000397442 RFX6Q8HWS3 928 aa28.5■■■□□ 2.15
CPNE1-203ENST00000397442 RCOR3Q9P2K3 495 aaPredicted RBP28.5■■■□□ 2.15
CPNE1-203ENST00000397442 DNMT3LQ9UJW3 386 aa28.5■■■□□ 2.15
CPNE1-203ENST00000397442 DOCK6Q96HP0 2047 aa28.5■■■□□ 2.15
CPNE1-203ENST00000397442 UQCRHLA0A096LP55 91 aa28.49■■■□□ 2.15
CPNE1-203ENST00000397442 PHF2O75151 1096 aa28.49■■■□□ 2.15
CPNE1-203ENST00000397442 UQCRHP07919 91 aa28.49■■■□□ 2.15
CPNE1-203ENST00000397442 GOT1P17174 413 aa28.49■■■□□ 2.15
CPNE1-203ENST00000397442 TUBB4BP68371 445 aa28.49■■■□□ 2.15
CPNE1-203ENST00000397442 DUSP6Q16828 381 aa28.49■■■□□ 2.15
CPNE1-203ENST00000397442 PABPC1LQ4VXU2 614 aaKnown RBP28.49■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms