RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PFKMP08237 780 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 PDGFRBP09619 1106 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 IRF5Q13568 498 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 PCBP1Q15365 356 aaKnown RBP eCLIP9.98□□□□□ -0.81
COL6A3-204ENST00000392003 TRNP1Q6NT89 227 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 ECHDC2Q86YB7 292 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 VPS52Q8N1B4 723 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 PPM1NQ8N819 430 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 TCP10LQ8TDR4 215 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 SLC35F5Q8WV83 523 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 USP6NLQ92738 828 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 SLCO1B3Q9NPD5 702 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 TUBGCP4Q9UGJ1 667 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 ZC3H7BQ9UGR2 993 aaKnown RBP9.98□□□□□ -0.81
COL6A3-204ENST00000392003 L3MBTL1Q9Y468 752 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 CITO14578 2027 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 NRCAMQ92823 1304 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 BCLAF3A2AJT9 711 aaKnown RBP9.98□□□□□ -0.81
COL6A3-204ENST00000392003 PAPSS1O43252 624 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-204ENST00000392003 E2F6O75461 281 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 RECQL4O94761 1208 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 ALADP13716 330 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 LCP1P13796 627 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 CYP2F1P24903 491 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 ADRA1DP25100 572 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 GNL1P36915 607 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-204ENST00000392003 ARL4AP40617 200 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 RASSF2P50749 326 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 KCNJ11Q14654 390 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 CCL14Q16627 93 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 FBXO47Q5MNV8 452 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 CST9Q5W186 159 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 ARHGAP17Q68EM7 881 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.98□□□□□ -0.81
COL6A3-204ENST00000392003 DCAKDQ8WVC6 231 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 NOD2Q9HC29 1040 aa9.98□□□□□ -0.81
COL6A3-204ENST00000392003 TCRBV9S1A1TA0A576 114 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 PEX14O75381 377 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 PIAS1O75925 651 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 AXLP30530 894 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 PNPLA4P41247 253 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 SKIV2L2P42285 1042 aaKnown RBP9.97□□□□□ -0.81
COL6A3-204ENST00000392003 PSEN2P49810 448 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 NRLP54845 237 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 RAB6CQ53S08 254 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 GNASQ5JWF2 1037 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 FAXCQ5TGI0 409 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 CGB2Q6NT52 195 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 ANKRD52Q8NB46 1076 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 PCDH19Q8TAB3 1148 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 SPOCK2Q92563 424 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 C18orf25Q96B23 403 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-204ENST00000392003 ERP27Q96DN0 273 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 ZNF570Q96NI8 536 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 RAB6CQ9H0N0 254 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 VPS11Q9H270 941 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 ETNK1Q9HBU6 452 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 RNF19AQ9NV58 838 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 ETNK2Q9NVF9 386 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 HES2Q9Y543 173 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 MAD1L1Q9Y6D9 718 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 MGAMO43451 1857 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 hCG_2014768A0A024R1R8 64 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 PPEF2O14830 753 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 HUS1O60921 280 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 STK10O94804 968 aaKnown RBP9.97□□□□□ -0.81
COL6A3-204ENST00000392003 TOMM70O94826 608 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 MAP3K6O95382 1288 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 PTPN9P43378 593 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 CUL3Q13618 768 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 MARCH8Q5T0T0 291 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 TTC39BQ5VTQ0 682 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-204ENST00000392003 C9orf57Q5W0N0 161 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 SLC26A11Q86WA9 606 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 LRRC6Q86X45 466 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 APPL2Q8NEU8 664 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 MAGEC3Q8TD91 643 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 SLC44A1Q8WWI5 657 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 TNIP3Q96KP6 325 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 DHRS4Q9BTZ2 278 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 EIF2AQ9BY44 585 aaKnown RBP9.97□□□□□ -0.81
COL6A3-204ENST00000392003 B3GNT5Q9BYG0 378 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 NRDE2Q9H7Z3 1164 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 USP29Q9HBJ7 922 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 AP4E1Q9UPM8 1137 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 TEX264Q9Y6I9 313 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 PAPPA2Q9BXP8 1791 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 COPEO14579 308 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 NR2C2P49116 596 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 TAF6P49848 677 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 KCNJ2P63252 427 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 FAAP100Q0VG06 881 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 RIPK1Q13546 671 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 EFHC1Q5JVL4 640 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 OLFML2BQ68BL8 750 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 HEATR6Q6AI08 1181 aaKnown RBP9.97□□□□□ -0.81
COL6A3-204ENST00000392003 SLC9A4Q6AI14 798 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 TWF2Q6IBS0 349 aaKnown RBP9.97□□□□□ -0.81
COL6A3-204ENST00000392003 CYP4V2Q6ZWL3 525 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-204ENST00000392003 SLC26A9Q7LBE3 791 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms