RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SDE2Q6IQ49 451 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 MSANTD2Q6P1R3 559 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 ENOSF1Q7L5Y1 443 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 IRF2BP1Q8IU81 584 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 CHPFQ8IZ52 775 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 PGBD3Q8N328 593 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 RLN3Q8WXF3 142 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 SMOC1Q9H4F8 434 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 CD248Q9HCU0 757 aa22.67■■□□□ 1.22
CCDC28B-201ENST00000373602 DCDC2BA2VCK2 349 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 GFRA2O00451 464 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 PIK3R2O00459 728 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 FBXO21O94952 628 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 KRT5P13647 590 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 GABRG2P18507 467 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 RPL34P49207 117 aaKnown RBP22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 LIMK1P53667 647 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 BYSLQ13895 437 aaKnown RBP22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 TRIM65Q6PJ69 517 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 CREBRFQ8IUR6 639 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 SPACA7Q96KW9 195 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 CRACR2AQ9BSW2 395 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 STOML2Q9UJZ1 356 aa22.66■■□□□ 1.22
CCDC28B-201ENST00000373602 MSI1O43347 362 aaKnown RBP22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 CAVIN2O95810 425 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 LATS1O95835 1130 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 LTFP02788 710 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 GPD2P43304 727 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 MEA1Q16626 185 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 FRMD1Q8N878 549 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 IPO4Q8TEX9 1081 aaKnown RBP22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 CLEC4CQ8WTT0 213 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 DDI1Q8WTU0 396 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 PIWIL1Q96J94 861 aaKnown RBP22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 FAM81BQ96LP2 452 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 SLC2A11Q9BYW1 496 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 RXFP3Q9NSD7 469 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 MBD1Q9UIS9 605 aaPredicted RBP22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 CLEC4EQ9ULY5 219 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 DNAH14Q0VDD8 3507 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 THADAQ6YHU6 1953 aa22.65■■□□□ 1.22
CCDC28B-201ENST00000373602 SLC9A1P19634 815 aa22.64■■□□□ 1.21
CCDC28B-201ENST00000373602 ZNF445P59923 1031 aa22.64■■□□□ 1.21
CCDC28B-201ENST00000373602 GEN1Q17RS7 908 aa22.64■■□□□ 1.21
CCDC28B-201ENST00000373602 MPPE1Q53F39 396 aa22.64■■□□□ 1.21
CCDC28B-201ENST00000373602 GBP6Q6ZN66 633 aa22.64■■□□□ 1.21
CCDC28B-201ENST00000373602 GOLGA1Q92805 767 aa22.64■■□□□ 1.21
CCDC28B-201ENST00000373602 CACNA2D2Q9NY47 1150 aa22.64■■□□□ 1.21
CCDC28B-201ENST00000373602 PLXND1Q9Y4D7 1925 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 GTPBP10A4D1E9 387 aaKnown RBP22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 MED7O43513 233 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 IGLV3-27P01718 113 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 DHPSP49366 369 aaPredicted RBP22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 ADGRF1Q5T601 910 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 TCEAL6Q6IPX3 200 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 KIAA1211LQ6NV74 962 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 DENND1BQ6P3S1 775 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 GJB7Q6PEY0 223 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 LPCAT2Q7L5N7 544 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 ANKS1BQ7Z6G8 1248 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 STK32AQ8WU08 396 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 ZNF606Q8WXB4 792 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 TCEAL3Q969E4 200 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 MIS12Q9H081 205 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 CALCOCO1Q9P1Z2 691 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 THAP10Q9P2Z0 257 aaPredicted RBP22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 APEX2Q9UBZ4 518 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 RAD54BQ9Y620 910 aa22.63■■□□□ 1.21
CCDC28B-201ENST00000373602 WASH3PC4AMC7 463 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 NPC1O15118 1278 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 ZBTB24O43167 697 aaPredicted RBP22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 MAP3K13O43283 966 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 LETM1O95202 739 aaPredicted RBP22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 FYNP06241 537 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 HOXD9P28356 352 aaPredicted RBP22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 ACADSBP45954 432 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 MTIF2P46199 727 aaKnown RBP22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 TPD52L1Q16890 204 aaPredicted RBP22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 EXOC3L4Q17RC7 722 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 SPDYCQ5MJ68 293 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 CYP2U1Q7Z449 544 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 SCUBE3Q8IX30 993 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 UCMAQ8WVF2 138 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 SLC4A5Q9BY07 1137 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 THAP9Q9H5L6 903 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 ST7Q9NRC1 585 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 STON1Q9Y6Q2 735 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 NUP205Q92621 2012 aa22.62■■□□□ 1.21
CCDC28B-201ENST00000373602 BECN2A8MW95 431 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 SART1O43290 800 aaKnown RBP22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 TSPAN3O60637 253 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 NDUFV2P19404 249 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 PON1P27169 355 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 GNA15P30679 374 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 ANP32AP39687 249 aaKnown RBP22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 APBA1Q02410 837 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 RING1Q06587 406 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 ENPP2Q13822 863 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 EIF4HQ15056 248 aaKnown RBP22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 DPCR1Q3MIW9 517 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms