RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 PRKAA2P54646 552 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 ACAP1Q15027 740 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 CYP51A1Q16850 503 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 TAF2Q6P1X5 1199 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 FAM83AQ86UY5 434 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 MYO1HQ8N1T3 1032 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 DNERQ8NFT8 737 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 SNRNP27Q8WVK2 155 aaKnown RBP11.73□□□□□ -0.53
PTPRF-203ENST00000372407 ZNF75CPQ92670 426 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-203ENST00000372407 KAT2BQ92831 832 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 TMEM169Q96HH4 297 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 EPS8L2Q9H6S3 715 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 NMRK2Q9NPI5 230 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 SAR1AQ9NR31 198 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 RRN3Q9NYV6 651 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 ITGA11Q9UKX5 1188 aa11.73□□□□□ -0.53
PTPRF-203ENST00000372407 PRR23D1E9PI22 279 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 H3BRB1 525 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 PDE2AO00408 941 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 NR5A2O00482 541 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 PRR23D2P0DMB1 279 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 ALOX15P16050 662 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 EIF4BP23588 611 aaKnown RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 CACNA2D1P54289 1103 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 SOX10P56693 466 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 CCDC153Q494R4 210 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 BRSK2Q8IWQ3 736 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 UBXN6Q9BZV1 441 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 TUT1Q9H6E5 874 aaKnown RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 NRDE2Q9H7Z3 1164 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 PAPOLBQ9NRJ5 636 aaKnown RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 UBP1Q9NZI7 540 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 RNF103O00237 685 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 MPOP05164 745 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 NDST1P52848 882 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 NME5P56597 212 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 YWHAZP63104 245 aaKnown RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 FAM117BQ6P1L5 589 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 WDR59Q6PJI9 974 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 ZDHHC17Q8IUH5 632 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 FUKQ8N0W3 1084 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 ZSWIM2Q8NEG5 633 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 HTR3CQ8WXA8 447 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 FAM136AQ96C01 138 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 LRRC39Q96DD0 335 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 A0A096LPK6 155 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 RGS5O15539 181 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 PLA2G6O60733 806 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 MT-CO1P00395 513 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 VIL1P09327 827 aaKnown RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 SLC1A6P48664 564 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 OXCT1P55809 520 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 PGM5Q15124 567 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 MARC1Q5VT66 337 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 ZBTB10Q96DT7 871 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 OXNAD1Q96HP4 312 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 CHST7Q9NS84 486 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 COPG1Q9Y678 874 aaKnown RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 NCF1BA6NI72 391 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 NCF1CA8MVU1 366 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 APOC4-APOC2K7ER74 178 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 APOC2P02655 101 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 IMPDH2P12268 514 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 NCF1P14598 390 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 FASP25445 335 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 THPOP40225 353 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 NR2C2P49116 596 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 ALDH7A1P49419 539 aaKnown RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 MAP3K7CLP57077 242 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 RRP1BQ14684 758 aaKnown RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 FBXO16Q8IX29 292 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-203ENST00000372407 BHMTQ93088 406 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 PRKD2Q9BZL6 878 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 NT5MQ9NPB1 228 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 PDGFCQ9NRA1 345 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 TBC1D13Q9NVG8 400 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 VTI1BQ9UEU0 232 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 DSEQ9UL01 958 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 C15orf41Q9Y2V0 281 aa11.72□□□□□ -0.53
PTPRF-203ENST00000372407 EML1O00423 815 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 FSBPO95073 299 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 PAEPP09466 180 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 PPATQ06203 517 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 TP53BP2Q13625 1128 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 POU6F1Q14863 301 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 NR6A1Q15406 480 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 CBWD6Q4V339 395 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 CBWD3Q5JTY5 395 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 CBWD5Q5RIA9 395 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 MAP4K3Q8IVH8 894 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 ZCCHC9Q8N567 271 aaKnown RBP11.71□□□□□ -0.53
PTPRF-203ENST00000372407 EPS8L1Q8TE68 723 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 VPS33AQ96AX1 596 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 MTMR9Q96QG7 549 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 SIKE1Q9BRV8 207 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 GLIS2Q9BZE0 524 aaPredicted RBP11.71□□□□□ -0.53
PTPRF-203ENST00000372407 KIAA1683Q9H0B3 1180 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 POLG2Q9UHN1 485 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 TMCC3Q9ULS5 477 aa11.71□□□□□ -0.53
PTPRF-203ENST00000372407 MRC1P22897 1456 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms