RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 BST1Q10588 318 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 UBAP2LQ14157 1087 aaKnown RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 OTUD3Q5T2D3 398 aaPredicted RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 RBM44Q6ZP01 1051 aaKnown RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 ULK2Q8IYT8 1036 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 STX19Q8N4C7 294 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 CAB39Q9Y376 341 aaPredicted RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 FSCN2O14926 492 aa16.33■□□□□ 0.21
COL17A1-202ENST00000369733 PEX1O43933 1283 aa16.33■□□□□ 0.21
COL17A1-202ENST00000369733 SHMT1P34896 483 aa16.33■□□□□ 0.21
COL17A1-202ENST00000369733 TRAF2Q12933 501 aa16.33■□□□□ 0.21
COL17A1-202ENST00000369733 ZRANB3Q5FWF4 1079 aa16.33■□□□□ 0.21
COL17A1-202ENST00000369733 SPANXN3Q5MJ09 141 aa16.33■□□□□ 0.21
COL17A1-202ENST00000369733 PRMT9Q6P2P2 845 aa16.33■□□□□ 0.21
COL17A1-202ENST00000369733 ALYREFQ86V81 257 aaKnown RBP16.33■□□□□ 0.21
COL17A1-202ENST00000369733 OTUB1Q96FW1 271 aaPredicted RBP16.33■□□□□ 0.21
COL17A1-202ENST00000369733 MAP3K20Q9NYL2 800 aaKnown RBP16.33■□□□□ 0.21
COL17A1-202ENST00000369733 PIM2Q9P1W9 311 aa16.33■□□□□ 0.21
COL17A1-202ENST00000369733 FGFR3P22607 806 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 CACHD1Q5VU97 1274 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 FAM71AQ8IYT1 594 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 OSCP1Q8WVF1 389 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 TNFRSF25Q93038 417 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 WDR41Q9HAD4 459 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 KCNMB3Q9NPA1 279 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 FBXO6Q9NRD1 293 aaPredicted RBP16.33■□□□□ 0.2
COL17A1-202ENST00000369733 TPP1O14773 563 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 INPP4BO15327 924 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 DDX3YO15523 660 aaKnown RBP16.33■□□□□ 0.2
COL17A1-202ENST00000369733 MIPP30301 263 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 TAF6P49848 677 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 MAPK10P53779 464 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 CES3Q6UWW8 571 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 SLC22A9Q8IVM8 553 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 C4orf32Q8N8J7 132 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 OR6J1Q8NGC5 347 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 HTR3CQ8WXA8 447 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 MAGED4Q96JG8 741 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 PPP1R10Q96QC0 940 aaKnown RBP16.33■□□□□ 0.2
COL17A1-202ENST00000369733 FICDQ9BVA6 458 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 POLLQ9UGP5 575 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 CNTNAP4Q9C0A0 1308 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 A0A0B4J269 797 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 MAGEB16A2A368 324 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 ANKRD63C9JTQ0 380 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 MGRN1O60291 552 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 PGK2P07205 417 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 VIL1P09327 827 aaKnown RBP16.33■□□□□ 0.2
COL17A1-202ENST00000369733 TRIM25Q14258 630 aaKnown RBP16.33■□□□□ 0.2
COL17A1-202ENST00000369733 TTC23LQ6PF05 361 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 FOXR2Q6PJQ5 311 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 KCNMB4Q86W47 210 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 TSPAN14Q8NG11 270 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 SEMA4DQ92854 862 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 ERAP1Q9NZ08 941 aa16.33■□□□□ 0.2
COL17A1-202ENST00000369733 TRMT6Q9UJA5 497 aaKnown RBP16.33■□□□□ 0.2
COL17A1-202ENST00000369733 LZTS3O60299 673 aaPredicted RBP16.32■□□□□ 0.2
COL17A1-202ENST00000369733 KDELR1P24390 212 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 MFSD5Q6N075 450 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 RBM46Q8TBY0 533 aaKnown RBP16.32■□□□□ 0.2
COL17A1-202ENST00000369733 BLOC1S5Q8TDH9 187 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 LENG1Q96BZ8 264 aaPredicted RBP16.32■□□□□ 0.2
COL17A1-202ENST00000369733 DCUN1D1Q96GG9 259 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 TBCBQ99426 244 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 BDH2Q9BUT1 245 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 PHACTR1Q9C0D0 580 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 CYP3A43Q9HB55 503 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 XPNPEP3Q9NQH7 507 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 UBP1Q9NZI7 540 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 LMCD1Q9NZU5 365 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 SALL4Q9UJQ4 1053 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 LINC00854A0A1B0GVQ3 168 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 SPDYE5A6NIY4 337 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 JCHAINP01591 159 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 CHRNA5P30532 468 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 FMO1Q01740 532 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 SPDYE7PQ495Y7 208 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 C9orf16Q9BUW7 83 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 ARL8BQ9NVJ2 186 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 A0A1W2PPM1 405 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 GLRA2P23416 452 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 PSMB9P28065 219 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 RBL1P28749 1068 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 PNPLA4P41247 253 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 IL5RAQ01344 420 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 NAB1Q13506 487 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 ECHDC2Q86YB7 292 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 LRRC39Q96DD0 335 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 PHF21BQ96EK2 531 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 ATAD3AQ9NVI7 634 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 JCADQ9P266 1359 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 TMEM150BA6NC51 233 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 VWA5AO00534 786 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 CHADO15335 359 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 ZMPSTE24O75844 475 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 LDLRP01130 860 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 STAG3L1P0CL83 205 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 BCAT1P54687 386 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 NR1H2P55055 460 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 CCDC142Q17RM4 750 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 126.6 ms