RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 FRMD8P1Q9BZ68 369 aaPredicted RBP12.54□□□□□ -0.4
CLIP3-201ENST00000360535 NDE1Q9NXR1 346 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 KCNK4Q9NYG8 393 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 STX18Q9P2W9 335 aaKnown RBP12.54□□□□□ -0.4
CLIP3-201ENST00000360535 TAGLN3Q9UI15 199 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 ADAMTS5Q9UNA0 930 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 HES2Q9Y543 173 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 ZBTB42B2RXF5 422 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 TGDSO95455 350 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 P4HA1P13674 534 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 ANPEPP15144 967 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 RXRBP28702 533 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 SLC10A6Q3KNW5 377 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 TCHHL1Q5QJ38 904 aaPredicted RBP12.54□□□□□ -0.4
CLIP3-201ENST00000360535 HEATR6Q6AI08 1181 aaKnown RBP12.54□□□□□ -0.4
CLIP3-201ENST00000360535 FAM131BQ86XD5 332 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 PGBD4Q96DM1 585 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 KLRG1Q96E93 195 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 MRPL45Q9BRJ2 306 aaKnown RBP12.54□□□□□ -0.4
CLIP3-201ENST00000360535 NT5C1AQ9BXI3 368 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 BCO2Q9BYV7 579 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 DPP3Q9NY33 737 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 TXNDC16Q9P2K2 825 aa12.54□□□□□ -0.4
CLIP3-201ENST00000360535 HBS1LQ9Y450 684 aaKnown RBP12.54□□□□□ -0.4
CLIP3-201ENST00000360535 HMX2A2RU54 273 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 CALRP27797 417 aaKnown RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 SERPINB6P35237 376 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 MLH1P40692 756 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 MBTD1Q05BQ5 628 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 KRT72Q14CN4 511 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 TAZQ16635 292 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 WDR75Q8IWA0 830 aaKnown RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 ADGRF2Q8IZF7 708 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 TNS4Q8IZW8 715 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 GSDMBQ8TAX9 411 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 OTUD5Q96G74 571 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 FAM167AQ96KS9 214 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 ZNF184Q99676 751 aaPredicted RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 SPATC1LQ9H0A9 340 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 NRDE2Q9H7Z3 1164 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 PAPOLBQ9NRJ5 636 aaKnown RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 MRPL42Q9Y6G3 142 aaKnown RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 PHIPQ8WWQ0 1821 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 CEP350Q5VT06 3117 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 TPP1O14773 563 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 CREB3O43889 395 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 DNAJC6O75061 913 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 SPAG6O75602 509 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 NPTXRO95502 500 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 BPGMP07738 259 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 ERVK-10P10266 1014 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 MGAT1P26572 445 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 PGGT1BP53609 377 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 IRX1P78414 480 aaPredicted RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 LPCAT4Q643R3 524 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 SLC30A9Q6PML9 568 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 CHST13Q8NET6 341 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 GBP5Q96PP8 586 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 HESX1Q9UBX0 185 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 ANGPTL2Q9UKU9 493 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 BARX2Q9UMQ3 279 aaPredicted RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 PSAT1Q9Y617 370 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 MCM3APO60318 1980 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 LIN7AO14910 233 aaPredicted RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 STK10O94804 968 aaKnown RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 PROCP04070 461 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 INSRRP14616 1297 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 ARF4P18085 180 aaPredicted RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 OCRLQ01968 901 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 BOLA3Q53S33 107 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 IRGCQ6NXR0 463 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 CMC1Q7Z7K0 106 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 TRIM42Q8IWZ5 723 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 EBNA1BP2Q99848 306 aaKnown RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 FZD8Q9H461 694 aa12.53□□□□□ -0.4
CLIP3-201ENST00000360535 APOBEC2Q9Y235 224 aaKnown RBP12.53□□□□□ -0.4
CLIP3-201ENST00000360535 NFKBIEO00221 500 aa12.52□□□□□ -0.4
CLIP3-201ENST00000360535 GOT1P17174 413 aa12.52□□□□□ -0.4
CLIP3-201ENST00000360535 RASIP1Q5U651 963 aa12.52□□□□□ -0.4
CLIP3-201ENST00000360535 TTC30AQ86WT1 665 aa12.52□□□□□ -0.4
CLIP3-201ENST00000360535 AZIN2Q96A70 460 aa12.52□□□□□ -0.4
CLIP3-201ENST00000360535 SIGLEC10Q96LC7 697 aa12.52□□□□□ -0.4
CLIP3-201ENST00000360535 DPEP3Q9H4B8 488 aa12.52□□□□□ -0.4
CLIP3-201ENST00000360535 IFT122Q9HBG6 1241 aa12.52□□□□□ -0.4
CLIP3-201ENST00000360535 PTPRHQ9HD43 1115 aa12.52□□□□□ -0.4
CLIP3-201ENST00000360535 GOLGA8TH3BQL2 631 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 SMAPO00193 183 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 AP1G2O75843 785 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 IL18RAPO95256 599 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF286BP0CG31 522 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 CCDC130P13994 396 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 TYK2P29597 1187 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 MSX2P35548 267 aaPredicted RBP12.52□□□□□ -0.41
CLIP3-201ENST00000360535 SLC1A6P48664 564 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 RABGGTBP53611 331 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 HDAC4P56524 1084 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF280AP59817 542 aaPredicted RBP12.52□□□□□ -0.41
CLIP3-201ENST00000360535 AP2B1P63010 937 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 USP4Q13107 963 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 GRM1Q13255 1194 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms