RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 PHLPP1O60346 1717 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 A0A088AWK7 358 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 ZNF862O60290 1169 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 RBMXL2O75526 392 aaKnown RBP10.45□□□□□ -0.74
CLIP1-202ENST00000358808 GLP2RO95838 553 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 IL6P05231 212 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 ZNF10P21506 573 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-202ENST00000358808 S100GP29377 79 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 EPHX2P34913 555 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 NUP107P57740 925 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 IL5RAQ01344 420 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 XRCC4Q13426 336 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 NDUFAF6Q330K2 333 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 FAAH2Q6GMR7 532 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 TMEM26Q6ZUK4 368 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 ZNF655Q8N720 491 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-202ENST00000358808 SLC4A9Q96Q91 983 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 VCPKMTQ9H867 229 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 CRYL1Q9Y2S2 319 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 RAD54BQ9Y620 910 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 TSPAN3O60637 253 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 PTPN1P18031 435 aaKnown RBP10.45□□□□□ -0.74
CLIP1-202ENST00000358808 SERPINH1P50454 418 aaKnown RBP10.45□□□□□ -0.74
CLIP1-202ENST00000358808 PURAQ00577 322 aaKnown RBP10.45□□□□□ -0.74
CLIP1-202ENST00000358808 DDR2Q16832 855 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 DSG4Q86SJ6 1040 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 IQCF2Q8IXL9 164 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 AGBL3Q8NEM8 1001 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 RMND5BQ96G75 393 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-202ENST00000358808 REEP2Q9BRK0 252 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 PI4K2AQ9BTU6 479 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 C1QTNF7Q9BXJ2 289 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 OSBPL8Q9BZF1 889 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 EPS8L2Q9H6S3 715 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 ADARB2Q9NS39 739 aaKnown RBP10.45□□□□□ -0.74
CLIP1-202ENST00000358808 RHOBTB3O94955 611 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 ITGA8P53708 1063 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 COPZ1P61923 177 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 ORC1Q13415 861 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 KYNUQ16719 465 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 CBWD3Q5JTY5 395 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 CBWD5Q5RIA9 395 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 ZNF280DQ6N043 979 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 CEP68Q76N32 757 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 LRRC49Q8IUZ0 686 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 ZNF671Q8TAW3 534 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 SGSM3Q96HU1 749 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 GMCL1Q96IK5 515 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 NSL1Q96IY1 281 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 MTA3Q9BTC8 594 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 ZCCHC2Q9C0B9 1178 aaKnown RBP10.45□□□□□ -0.74
CLIP1-202ENST00000358808 ING3Q9NXR8 418 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 TRIM10Q9UDY6 481 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 AP4S1Q9Y587 144 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 COL5A2P05997 1499 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-202ENST00000358808 KATNA1O75449 491 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 CYP2C8P10632 490 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 BRSK2Q8IWQ3 736 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 CHPFQ8IZ52 775 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 LRRC39Q96DD0 335 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 OMA1Q96E52 524 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 RACGAP1Q9H0H5 632 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 ATXN3LQ9H3M9 355 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 NT5MQ9NPB1 228 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 SPG21Q9NZD8 308 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 NYAP2Q9P242 653 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 SNX13Q9Y5W8 968 aa10.45□□□□□ -0.74
CLIP1-202ENST00000358808 H3BN98 237 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 GALCP54803 685 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 GEMIN4P57678 1058 aaKnown RBP10.44□□□□□ -0.74
CLIP1-202ENST00000358808 PTSQ03393 145 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 ARMC3Q5W041 872 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 TRPM8Q7Z2W7 1104 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 STX12Q86Y82 276 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 ADGRF2Q8IZF7 708 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 DNAJC9Q8WXX5 260 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 COQ7Q99807 217 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 TMEM39AQ9NV64 488 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 MBD2Q9UBB5 411 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 PCDHGA3Q9Y5H0 932 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 RPS6KL1Q9Y6S9 549 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 RFX7Q2KHR2 1363 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 ZNF839A8K0R7 811 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 SMAPO00193 183 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 DNALI1O14645 258 aaPredicted RBP10.44□□□□□ -0.74
CLIP1-202ENST00000358808 RBP3P10745 1247 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 RAG1P15918 1043 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 GSSP48637 474 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 THOP1P52888 689 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 ZNF543Q08ER8 600 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 BOP1Q14137 746 aaKnown RBP10.44□□□□□ -0.74
CLIP1-202ENST00000358808 FEZF2Q8TBJ5 459 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 RRAGCQ9HB90 399 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 ENTPD4Q9Y227 616 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 SF3B1O75533 1304 aaKnown RBP eCLIP10.44□□□□□ -0.748e-7■■■■■ 170.2
CLIP1-202ENST00000358808 OPLAHO14841 1288 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 FOXN1O15353 648 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 MYL12AP19105 171 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 SPIDRQ14159 915 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 TRAPPC11Q7Z392 1133 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms